| Name | FANK1 antisense RNA 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough none of the provided abstracts directly mention FANK1‑AS1, the studies they describe highlight key innate immune processes in which a long noncoding RNA like FANK1‑AS1 could conceivably play a modulatory role. For instance, one study demonstrated that the combined deficiency of Pglyrp3 and Nod2 in mice leads to exacerbated colitis characterized by increased epithelial apoptosis, altered gut microbiota, and elevated ATP levels. These findings emphasize the importance of tight regulation in maintaining intestinal homeostasis – a context in which regulatory RNAs such as FANK1‑AS1 might participate by fine‐tuning gene expression and inflammatory signaling pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAnother investigation focused on the ocular surface revealed that other members of the peptidoglycan recognition protein family are essential for antibacterial defense in Pseudomonas aeruginosa keratitis. Although FANK1‑AS1 was not examined in this study, the work underscores the broader principle that effective innate immunity relies on precise regulation; noncoding RNAs like FANK1‑AS1 may similarly contribute to modulating local immune responses and preserving tissue integrity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nA third study addressing intestinal metaflammation and bacterial dysbiosis further exemplifies the necessity of coordinating host defense mechanisms with commensal microbiota. Here, the protective role of Pglyrp3 in counteracting inflammation suggests that additional regulatory layers – potentially mediated by long noncoding RNAs such as FANK1‑AS1 – could participate in balancing immune responses and microbial interactions within the gut."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xuefang Jing, Fareeha Zulfiqar, Shin Yong Park, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Peptidoglycan recognition protein 3 and Nod2 synergistically protect mice from dextran sodium sulfate-induced colitis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.1301548"}], "href": "https://doi.org/10.4049/jimmunol.1301548"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25114103"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25114103"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Ranjita N Gowda, Rachel Redfern, Jihane Frikeche, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Functions of Peptidoglycan Recognition Proteins (Pglyrps) at the Ocular Surface: Bacterial Keratitis in Gene-Targeted Mice Deficient in Pglyrp-2, -3 and -4."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0137129"}], "href": "https://doi.org/10.1371/journal.pone.0137129"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26332373"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26332373"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Darab Ghadimi, Michael de Vrese, Michael Ebsen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Study on the additive protective effect of PGLYRP3 and Bifidobacterium adolescentis Reuter 1963 on severity of DSS-induced colitis in Pglyrp3 knockout (Pglyrp3 -/-) and wild-type (WT) mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Immunobiology (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.imbio.2020.152028"}], "href": "https://doi.org/10.1016/j.imbio.2020.152028"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33242664"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33242664"}]}]}]}
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| NCBI Gene ID | 101410540 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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FANK1-AS1 has 14 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 3 datasets.
Click the + buttons to view associations for FANK1-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of FANK1-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of FANK1-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of FANK1-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |