| Name | FERRY endosomal RAB5 effector complex subunit 3 |
| Description | This gene is highly conserved from nematodes to humans. In rat, the orthologous gene encodes a cytoplasmic protein that is involved in mast cell degranulation. The human gene has been implicated in autosomal recessive intellectual disability. [provided by RefSeq, Sep 2016] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent studies have established that FADS3 is a bona fide lipid desaturase that plays a critical role in sphingolipid de novo synthesis. Specifically, FADS3 catalyzes the introduction of a Δ14 double bond in long‐chain base (LCB) backbones to form dienic LCBs (e.g. sphingadienine) and converts the atypical, cytotoxic 1‑deoxysphinganine into the less toxic 1‑deoxysphingosine. In addition, multiple studies have demonstrated that FADS3 exists as several protein isoforms and alternative transcripts with tissue‐specific expression patterns that correlate with distinct fatty acid profiles, suggesting a regulatory role in the synthesis of highly unsaturated fatty acids (HUFA) in tissues such as liver, brain, and even the decidualized uterus. Moreover, knockout mouse models and hormonal studies indicate that FADS3 function contributes to liver-mediated DHA synthesis critical for brain accretion, and its expression is upregulated by estrogen and progesterone during decidualization."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn parallel, work on the C12orf4 gene has revealed a distinct cellular function for its encoded protein, which has been implicated in intracellular signaling events. Initially identified through an intrabody‐based screen in mast cells, the C12orf4 protein appears to be a cytoplasmic factor that participates in early signaling following FcεRI-mediated cell activation. Clinically, mutations in C12orf4 are associated with autosomal recessive intellectual disability, with studies reporting both missense and frameshift variants in affected individuals, thereby establishing C12orf4 as a causative gene for intellectual disability in different populations."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Frédérique Pédrono, Hélène Blanchard, Maela Kloareg, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The fatty acid desaturase 3 gene encodes for different FADS3 protein isoforms in mammalian tissues."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Lipid Res (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1194/jlr.M000588"}], "href": "https://doi.org/10.1194/jlr.M000588"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19752397"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19752397"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Ji Yao Zhang, Xia Qin, Hui Gyu Park, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Alternative splicing generates novel Fads3 transcript in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11033-016-4018-7"}], "href": "https://doi.org/10.1007/s11033-016-4018-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27216536"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27216536"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Ji Yao Zhang, Xia Qin, Allison Liang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Fads3 modulates docosahexaenoic acid in liver and brain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Prostaglandins Leukot Essent Fatty Acids (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.plefa.2017.07.001"}], "href": "https://doi.org/10.1016/j.plefa.2017.07.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28838557"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28838557"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Shuai Lin, Yu-Yuan Zhu, Wei Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Decidual expression and regulation of fatty acid desaturase 3 during mouse decidualization."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Reproduction (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1530/REP-18-0145"}], "href": "https://doi.org/10.1530/REP-18-0145"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30400035"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30400035"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Gergely Karsai, Museer Lone, Zoltán Kutalik, et al. "}, {"type": "b", "children": [{"type": "t", "text": "FADS3 is a Δ14Z sphingoid base desaturase that contributes to gender differences in the human plasma sphingolipidome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.AC119.011883"}], "href": "https://doi.org/10.1074/jbc.AC119.011883"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31862735"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31862735"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Elsa Mazuc, Laurence Guglielmi, Nicole Bec, et al. "}, {"type": "b", "children": [{"type": "t", "text": "In-cell intrabody selection from a diverse human library identifies C12orf4 protein as a new player in rodent mast cell degranulation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0104998"}], "href": "https://doi.org/10.1371/journal.pone.0104998"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25122211"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25122211"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "A K Philips, M Pinelli, C I de Bie, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of C12orf4 as a gene for autosomal recessive intellectual disability."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Genet (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/cge.12821"}], "href": "https://doi.org/10.1111/cge.12821"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27311568"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27311568"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Zahra Rashvand, Kimia Kahrizi, Hossein Najmabadi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A novel variant of C12orf4 linked to autosomal recessive intellectual disability type 66 with phenotype expansion."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Gene Med (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jgm.3406"}], "href": "https://doi.org/10.1002/jgm.3406"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34967075"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34967075"}]}]}]}
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| NCBI Gene ID | 57102 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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FERRY3 has 916 functional associations with biological entities spanning 6 categories (chemical, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 18 datasets.
Click the + buttons to view associations for FERRY3 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of FERRY3 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| Carcinogenome Chemical Perturbation Carcinogenicity Signatures | small molecule perturbations changing expression of FERRY3 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset. | |
| ClinVar Gene-Phenotype Associations 2025 | phenotypes associated with FERRY3 gene from the curated ClinVar Gene-Phenotype Associations 2025 dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of FERRY3 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving FERRY3 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing FERRY3 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of FERRY3 gene from the GTEx eQTL 2025 dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of FERRY3 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with FERRY3 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of FERRY3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of FERRY3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of FERRY3 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of FERRY3 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of FERRY3 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of FERRY3 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of FERRY3 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of FERRY3 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Sci-Plex Drug Perturbation Signatures | drug perturbations changing expression of FERRY3 gene from the Sci-Plex Drug Perturbation Signatures dataset. | |