| Name | flagellum associated containing coiled-coil domains 1 |
| Description | Predicted to be located in cytoplasmic vesicle and outer dense fiber. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n FLACC1 (alias ALS2CR12) is a multifunctional gene located within the 2q33 region that has emerged from several independent lines of research. Genetic association studies across multiple cancer types – including basal cell carcinoma, breast, lung, and esophageal cancers – have repeatedly implicated common variants in the CASP8/ALS2CR12 region as contributing to disease susceptibility, possibly by influencing splice variants or regulatory elements involved in apoptotic signaling (see."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In parallel, functional studies in the reproductive system have characterized FLACC1 as a spermatogenic cell–specific gene. In mice, alternative splicing of the Als2cr12 transcript yields an isoform that is uniquely expressed in male germ cells; the encoded protein localizes to the fibrous sheath of the sperm flagellum, suggesting an important role in sperm maturation and motility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, epigenetic investigations in human spermatozoa have demonstrated that alterations in DNA methylation at FLACC1/ALS2CR12 are associated with reduced fecundity and other adverse effects caused by environmental factors such as heavy tobacco smoking. In these studies, significant differences in CpG methylation and concomitant changes in gene expression were observed when comparing subfertile or heavily exposed males to controls, supporting a role for FLACC1 in maintaining normal sperm function."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, the available data suggest that FLACC1/ALS2CR12 may serve dual functions: its genetic variation is linked to cancer susceptibility—likely via modulation of apoptotic pathways in concert with nearby CASP8—and its testis-specific expression and epigenetic regulation underpin essential roles in spermatogenesis and sperm function.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Simon N Stacey, Hannes Helgason, Sigurjon A Gudjonsson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "New basal cell carcinoma susceptibility loci."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncomms7825"}], "href": "https://doi.org/10.1038/ncomms7825"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25855136"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25855136"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Wei-Yu Lin, Nicola J Camp, Maya Ghoussaini, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification and characterization of novel associations in the CASP8/ALS2CR12 region on chromosome 2 with breast cancer risk."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddu431"}], "href": "https://doi.org/10.1093/hmg/ddu431"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25168388"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25168388"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Eunyoung Choi, Chunghee Cho "}, {"type": "b", "children": [{"type": "t", "text": "Expression of a sperm flagellum component encoded by the Als2cr12 gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene Expr Patterns (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gep.2011.03.003"}], "href": "https://doi.org/10.1016/j.gep.2011.03.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21402173"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21402173"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "M Laqqan, M E Hammadeh "}, {"type": "b", "children": [{"type": "t", "text": "Alterations in DNA methylation patterns and gene expression in spermatozoa of subfertile males."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Andrologia (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/and.12934"}], "href": "https://doi.org/10.1111/and.12934"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29230837"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29230837"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Mohammed M Laqqan, Maged M Yassin "}, {"type": "b", "children": [{"type": "t", "text": "Cigarette heavy smoking alters DNA methylation patterns and gene transcription levels in humans spermatozoa."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Environ Sci Pollut Res Int (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11356-021-17786-8"}], "href": "https://doi.org/10.1007/s11356-021-17786-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34855177"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34855177"}]}]}]}
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| NCBI Gene ID | 130540 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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FLACC1 has 1,038 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 20 datasets.
Click the + buttons to view associations for FLACC1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of FLACC1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of FLACC1 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing FLACC1 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 | cellular components containing FLACC1 protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with FLACC1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores 2025 | diseases associated with FLACC1 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with FLACC1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing FLACC1 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of FLACC1 gene from the GTEx eQTL 2025 dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with FLACC1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of FLACC1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of FLACC1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| MoTrPAC Rat Endurance Exercise Training | tissue samples with high or low expression of FLACC1 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of FLACC1 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of FLACC1 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of FLACC1 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Tahoe Therapeutics Tahoe 100M Perturbation Atlas | drug perturbations changing expression of FLACC1 gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of FLACC1 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of FLACC1 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with FLACC1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |