FLJ16779 Gene

Name uncharacterized LOC100192386
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n FLJ16779 is a long non‐coding RNA that has been identified as a component of a prognostic signature for gastric cancer. In a recent study, FLJ16779, together with OVAAL and FAM230D, was incorporated into a three‐lncRNA model that robustly stratified patients into high- and low-risk groups, with elevated risk scores being associated with significantly poorer overall survival (OS) (1."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Gene Set Enrichment Analysis further indicated that the low-risk group, which may reflect differential lncRNA expression including FLJ16779, exhibited significant clustering of diverse metabolic pathways, implicating these lncRNAs in the modulation of metabolic processes that could underlie gastric carcinogenesis (1."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Although the precise mechanistic role of FLJ16779 remains to be fully elucidated, its inclusion in the prognostic signature highlights its potential as an independent biomarker for the prediction of patient outcomes in gastric cancer.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yongqiang Wang, Huimin Zhang, Ju Wang "}, {"type": "b", "children": [{"type": "t", "text": "Discovery of a novel three-long non-coding RNA signature for predicting the prognosis of patients with gastric cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Gastrointest Oncol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.21037/jgo-20-140"}], "href": "https://doi.org/10.21037/jgo-20-140"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32953159"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32953159"}]}]}]}
NCBI Gene ID 100192386
API
Download Associations
Predicted Functions View FLJ16779's ARCHS4 Predicted Functions.
Co-expressed Genes View FLJ16779's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View FLJ16779's ARCHS4 Predicted Functions.

Functional Associations

FLJ16779 has 650 functional associations with biological entities spanning 5 categories (molecular profile, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 18 datasets.

Click the + buttons to view associations for FLJ16779 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of FLJ16779 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of FLJ16779 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of FLJ16779 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of FLJ16779 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of FLJ16779 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at FLJ16779 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of FLJ16779 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of FLJ16779 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of FLJ16779 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of FLJ16779 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of FLJ16779 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of FLJ16779 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of FLJ16779 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of FLJ16779 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of FLJ16779 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of FLJ16779 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at FLJ16779 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of FLJ16779 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.