FLJ22447 Gene

Name uncharacterized LOC400221
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n FLJ22447 is a long non‐coding RNA that appears to play context‐dependent roles in cancer progression. In esophageal squamous cell carcinoma (ESCC) and gastric cancer (GC), FLJ22447 expression is reduced in tumor tissues compared to adjacent non‐tumor tissues, and its low levels are strongly correlated with increased expression of HIF1A and VEGF. These findings suggest that FLJ22447 may normally act to modulate hypoxia and angiogenesis signaling pathways, potentially restraining tumor cell proliferation and vascularization."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Conversely, in the tumor microenvironment of oral squamous cell carcinoma (OSCC), FLJ22447 (also referred to as LncRNA‐CAF) is markedly up‐regulated in cancer-associated fibroblasts (CAFs). In this setting, FLJ22447 exerts a pro-tumorigenic role by up-regulating and stabilizing the cytokine interleukin-33 (IL-33). Mechanistically, FLJ22447 prevents the autophagy-lysosome–dependent degradation of IL-33, thereby sustaining high levels of IL-33, which in turn promotes fibroblast activation and enhances tumor cell proliferation. FLJ22447’s interactions with hub proteins known to mediate proliferation, apoptosis, and angiogenesis further underscore its multifaceted role in reprogramming the tumor stroma and facilitating cancer progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, these studies highlight that FLJ22447 can function both as a modulator of key oncogenic pathways involving hypoxia and vascular growth factors in tumor cells as well as a driver for stromal reprogramming via stabilization of IL-33 in CAFs. Its context-dependent effects on tumor microenvironment interactions and cellular homeostasis make FLJ22447 a promising candidate for further investigation as a potential therapeutic target in cancer.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Shabbou Bahramian, Reza Sahebi, Zahra Roohinejad, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Low expression of LncRNA-CAF attributed to the high expression of HIF1A in esophageal squamous cell carcinoma and gastric cancer patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Rep (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11033-021-06882-0"}], "href": "https://doi.org/10.1007/s11033-021-06882-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35040008"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35040008"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Liang Ding, Jing Ren, Dongya Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A novel stromal lncRNA signature reprograms fibroblasts to promote the growth of oral squamous cell carcinoma via LncRNA-CAF/interleukin-33."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Carcinogenesis (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/carcin/bgy006"}], "href": "https://doi.org/10.1093/carcin/bgy006"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29346528"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29346528"}]}]}]}
NCBI Gene ID 400221
API
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Predicted Functions View FLJ22447's ARCHS4 Predicted Functions.
Co-expressed Genes View FLJ22447's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View FLJ22447's ARCHS4 Predicted Functions.

Functional Associations

FLJ22447 has 730 functional associations with biological entities spanning 5 categories (molecular profile, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.

Click the + buttons to view associations for FLJ22447 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of FLJ22447 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of FLJ22447 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of FLJ22447 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of FLJ22447 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at FLJ22447 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of FLJ22447 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of FLJ22447 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GWASdb SNP-Disease Associations diseases associated with FLJ22447 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with FLJ22447 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of FLJ22447 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain FLJ22447 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of FLJ22447 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at FLJ22447 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.