FLJ33360 Gene

Name FLJ33360 protein
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have highlighted a potential role for the long non‐coding RNA FLJ33360, which is located on the short arm of chromosome 5. In one line of investigation into Cri‐du‐chat syndrome—a condition caused by deletions spanning regions from 5p15.2 to 5p13—delineation of these breakpoints has underscored the importance of regulatory elements in determining the syndrome’s phenotypic presentation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Furthermore, a genome‐wide association study aimed at understanding the complex genetic architecture underlying atrioventricular septal defects in Down syndrome identified disomic regions on chromosome 5, including 5p15.31, among others. Although no single variant of large effect was found, this study adds to the evidence that multiple low-to-moderate effect variants in these regions may be significant, suggesting that genes located in these areas (potentially including FLJ33360) could contribute in a regulatory capacity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In a more direct investigation of FLJ33360’s function, research in hepatocellular carcinoma (HCC) demonstrated that FLJ33360 is upregulated in tumor tissues compared to adjacent non-tumor tissues. Functional assays in HCC cell lines (Bel-7402 and HepG2) revealed that knockdown of FLJ33360 significantly attenuated cell migration and invasion. Mechanistically, FLJ33360 appears to act by binding to miRNA-140, thereby reducing its levels; this downregulation of miRNA-140 leads to increased expression of MMP9, facilitating enhanced metastatic capability of HCC cells. Rescue experiments further supported the notion that the FLJ33360/miRNA-140/MMP9 axis plays a critical role in promoting HCC progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, while genetic studies in chromosomal deletion syndromes and congenital heart defects underscore the importance of regulatory elements in the 5p region, direct functional analyses in HCC have identified FLJ33360 as a pro-metastatic lncRNA that exerts its effects through a miRNA-140 dependent mechanism. This multifaceted involvement suggests that FLJ33360 may be a key regulatory element whose altered expression contributes to disease phenotypes across different clinical contexts.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Layla Damasceno Espirito Santo, Lília Maria Azevedo Moreira, Mariluce Riegel "}, {"type": "b", "children": [{"type": "t", "text": "Cri-Du-Chat Syndrome: Clinical Profile and Chromosomal Microarray Analysis in Six Patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Res Int (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2016/5467083"}], "href": "https://doi.org/10.1155/2016/5467083"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27144168"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27144168"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Dhanya Ramachandran, Zhen Zeng, Adam E Locke, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-Wide Association Study of Down Syndrome-Associated Atrioventricular Septal Defects."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "G3 (Bethesda) (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1534/g3.115.019943"}], "href": "https://doi.org/10.1534/g3.115.019943"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26194203"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26194203"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Zhenhui Lu, Yingzi Yu, Xiangchun Ding, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA FLJ33360 accelerates the metastasis in hepatocellular carcinoma by targeting miRNA-140/MMP9 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Transl Res (2020)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32194906"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32194906"}]}]}]}
Synonyms LINC02145
NCBI Gene ID 401172
API
Download Associations
Predicted Functions View FLJ33360's ARCHS4 Predicted Functions.
Co-expressed Genes View FLJ33360's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View FLJ33360's ARCHS4 Predicted Functions.

Functional Associations

FLJ33360 has 781 functional associations with biological entities spanning 6 categories (molecular profile, organism, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 27 datasets.

Click the + buttons to view associations for FLJ33360 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of FLJ33360 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of FLJ33360 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of FLJ33360 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of FLJ33360 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of FLJ33360 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of FLJ33360 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of FLJ33360 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of FLJ33360 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
dbGAP Gene-Trait Associations traits associated with FLJ33360 gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at FLJ33360 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of FLJ33360 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of FLJ33360 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GAD Gene-Disease Associations diseases associated with FLJ33360 gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of FLJ33360 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of FLJ33360 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of FLJ33360 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of FLJ33360 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with FLJ33360 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
GWASdb SNP-Disease Associations diseases associated with FLJ33360 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with FLJ33360 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with FLJ33360 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of FLJ33360 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of FLJ33360 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of FLJ33360 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain FLJ33360 protein from the LOCATE Predicted Protein Localization Annotations dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at FLJ33360 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of FLJ33360 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.