FLJ39080 Gene

Name
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n FLJ39080, also known as MIR2052HG, is a long noncoding RNA that plays a critical regulatory role in estrogen receptor–positive breast cancer. It exerts its function primarily by interacting with the transcription factor EGR1, which it helps recruit to the promoter of LMTK3. The ensuing increase in LMTK3 expression contributes to the maintenance of estrogen receptor‐α (ERα) levels through a dual mechanism: firstly, by promoting AKT/FOXO3‐mediated transcription of the ESR1 gene; and secondly, by limiting ubiquitin‐mediated, proteasome‐dependent degradation of ERα via suppression of protein kinase C (PKC) activity and its downstream MEK/ERK/RSK1 signaling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Genome‐wide analyses have further revealed that genetic polymorphisms within FLJ39080/MIR2052HG are functionally significant. Variant alleles modulate MIR2052HG expression in response to hormonal stimuli and aromatase inhibitor therapy, resulting in altered ERα binding dynamics and, ultimately, influencing both breast cancer recurrence risk and responses to endocrine treatment."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Additionally, reviews have underscored its emerging role in aromatase‐dependent cancers via transcriptional regulation of aromatase (CYP19A1) and modulation of estrogen synthesis, further linking FLJ39080/MIR2052HG to tumor progression and treatment outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In contrast, investigations into the association of MIR2052HG genetic variants with conditions such as recurrent miscarriage have not established a significant correlation, suggesting that its critical functional impact is more closely aligned with the regulation of estrogen signaling in breast cancer rather than other reproductive pathologies."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Overall, FLJ39080/MIR2052HG emerges as a pivotal modulator of ERα stability and estrogen signaling, offering a potential target for therapeutic intervention in ERα‐positive breast cancer.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Junmei Cairns, James N Ingle, Krishna R Kalari, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The lncRNA MIR2052HG regulates ERα levels and aromatase inhibitor resistance through LMTK3 by recruiting EGR1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Breast Cancer Res (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13058-019-1130-3"}], "href": "https://doi.org/10.1186/s13058-019-1130-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30944027"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30944027"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "James N Ingle, Fang Xie, Matthew J Ellis, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic Polymorphisms in the Long Noncoding RNA MIR2052HG Offer a Pharmacogenomic Basis for the Response of Breast Cancer Patients to Aromatase Inhibitor Therapy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Res (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/0008-5472.CAN-16-1371"}], "href": "https://doi.org/10.1158/0008-5472.CAN-16-1371"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27758888"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27758888"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Tushar Singh Barwal, Uttam Sharma, Sonali Bazala, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MicroRNAs and Long Noncoding RNAs as Novel Therapeutic Targets in Estrogen Receptor-Positive Breast and Ovarian Cancers."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms22084072"}], "href": "https://doi.org/10.3390/ijms22084072"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33920789"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33920789"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Hanran Mai, Canhong Cai, Kun Lin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association between the rs3802201 polymorphism of the lncRNA MIR2052HG gene and the risk of recurrent miscarriage in a Southern Chinese population."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Lab Anal (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcla.24167"}], "href": "https://doi.org/10.1002/jcla.24167"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34910326"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34910326"}]}]}]}
NCBI Gene ID 441355
API
Download Associations
Predicted Functions View FLJ39080's ARCHS4 Predicted Functions.
Co-expressed Genes View FLJ39080's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View FLJ39080's ARCHS4 Predicted Functions.

Functional Associations

FLJ39080 has 330 functional associations with biological entities spanning 6 categories (molecular profile, organism, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 21 datasets.

Click the + buttons to view associations for FLJ39080 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of FLJ39080 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of FLJ39080 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of FLJ39080 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of FLJ39080 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of FLJ39080 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at FLJ39080 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of FLJ39080 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of FLJ39080 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of FLJ39080 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of FLJ39080 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of FLJ39080 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with FLJ39080 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
GWASdb SNP-Disease Associations diseases associated with FLJ39080 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with FLJ39080 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of FLJ39080 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of FLJ39080 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of FLJ39080 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain FLJ39080 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of FLJ39080 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of FLJ39080 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at FLJ39080 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.