| Name | Frey regulator of sperm-oocyte fusion 1 |
| Description | Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in fusion of sperm to egg plasma membrane involved in single fertilization; maintenance of protein localization in endoplasmic reticulum; and sperm-egg recognition. Predicted to act upstream of or within several processes, including protein modification process; protein stabilization; and spermatid development. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nCochlin is a multifunctional extracellular matrix protein most notably expressed in sensory tissues. In the inner ear, it is highly expressed by fibrocytes within the spiral limbus, spiral ligament, and supporting structures, and its normal processing is critical for auditory and vestibular function. Mutations in COCH lead to the DFNA9 syndrome, a late‐onset, progressive sensorineural hearing loss and vestibular dysfunction characterized by acellular deposits and disrupted tissue architecture. In mouse models, both knock‐in and knock‐out strategies have revealed that mutant cochlin accumulation correlates with cochlear and vestibular pathology, while alterations in cochlin isoforms (including loss of the N‑terminal FCH/LCCL domain) are associated with neuroepithelial degeneration and stress responses in the inner ear."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "6"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the ocular compartment, cochlin has emerged as a key player in the regulation of intraocular pressure (IOP) and may thus contribute to primary open angle glaucoma. Proteomic analyses of glaucomatous trabecular meshwork have revealed abnormal cochlin deposits that co‐localize with extracellular matrix components, such as collagen, and mucopolysaccharides; under mechanical shear stress, cochlin multimerizes in a way that impairs its proteolytic degradation, thereby potentially disrupting aqueous humor outflow. Overexpression, reintroduction, or exogenous addition of cochlin leads to elevated IOP, whereas down‐regulation produces the converse effect, underscoring its role as a mechanosensor within the extracellular matrix of the eye."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "9"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its roles in sensory organs, cochlin has been implicated in immune function and stem cell maintenance. In lymphoid tissues, follicular dendritic cells selectively express and liberate cleaved fragments of cochlin during inflammation, where its LCCL domain sequesters bacteria and orchestrates local cytokine production and immune cell recruitment in bacterial infections. Furthermore, in embryonic stem cells, cochlin—up‐regulated by BMP4 signaling via Smad pathways—supports self‑renewal and suppresses neural differentiation, thereby acting as an important downstream effector of BMP signaling. Interestingly, in a noise exposure model, the absence of cochlin offers protective effects against auditory threshold shifts, highlighting its multifaceted role in modulating both innate immunity and cellular responses to mechanical stress."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "10", "end_ref": "12"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "N G Robertson, B L Resendes, J S Lin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Inner ear localization of mRNA and protein products of COCH, mutated in the sensorineural deafness and vestibular disorder, DFNA9."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2001)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/10.22.2493"}], "href": "https://doi.org/10.1093/hmg/10.22.2493"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11709536"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11709536"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Nahid G Robertson, Sherri M Jones, Theru A Sivakumaran, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A targeted Coch missense mutation: a knock-in mouse model for DFNA9 late-onset hearing loss and vestibular dysfunction."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddn236"}], "href": "https://doi.org/10.1093/hmg/ddn236"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18697796"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18697796"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Mark R Chance, Jinsook Chang, Shuqing Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Proteomics, bioinformatics and targeted gene expression analysis reveals up-regulation of cochlin and identifies other potential biomarkers in the mouse model for deafness in Usher syndrome type 1F."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddq025"}], "href": "https://doi.org/10.1093/hmg/ddq025"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20097680"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20097680"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Sherri M Jones, Nahid G Robertson, Shelly Given, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Hearing and vestibular deficits in the Coch(-/-) null mouse model: comparison to the Coch(G88E/G88E) mouse and to DFNA9 hearing and balance disorder."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hear Res (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.heares.2010.11.002"}], "href": "https://doi.org/10.1016/j.heares.2010.11.002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21073934"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21073934"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Nahid G Robertson, Jennifer T O'Malley, Cheng Ai Ong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cochlin in normal middle ear and abnormal middle ear deposits in DFNA9 and Coch (G88E/G88E) mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Assoc Res Otolaryngol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10162-014-0481-9"}], "href": "https://doi.org/10.1007/s10162-014-0481-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25049087"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25049087"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Jinsei Jung, Jee Eun Yoo, Young Ho Choe, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cleaved Cochlin Sequesters Pseudomonas aeruginosa and Activates Innate Immunity in the Inner Ear."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Host Microbe (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.chom.2019.02.001"}], "href": "https://doi.org/10.1016/j.chom.2019.02.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30905438"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30905438"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Sanjoy K Bhattacharya, Edward J Rockwood, Scott D Smith, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Proteomics reveal Cochlin deposits associated with glaucomatous trabecular meshwork."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M411233200"}], "href": "https://doi.org/10.1074/jbc.M411233200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15579465"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15579465"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Sanjoy K Bhattacharya, Neal S Peachey, John W Crabb "}, {"type": "b", "children": [{"type": "t", "text": "Cochlin and glaucoma: a mini-review."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Vis Neurosci (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1017/S0952523805225099"}], "href": "https://doi.org/10.1017/S0952523805225099"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16332271"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16332271"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Manik Goel, Adam E Sienkiewicz, Renata Picciani, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cochlin, intraocular pressure regulation and mechanosensing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0034309"}], "href": "https://doi.org/10.1371/journal.pone.0034309"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22496787"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22496787"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Jianping Zhang, Teng Fei, Zhongwei Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "BMP induces cochlin expression to facilitate self-renewal and suppress neural differentiation of mouse embryonic stem cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M112.433995"}], "href": "https://doi.org/10.1074/jbc.M112.433995"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23344953"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23344953"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Bénédicte F Py, Santiago F Gonzalez, Kai Long, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cochlin produced by follicular dendritic cells promotes antibacterial innate immunity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Immunity (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.immuni.2013.01.015"}], "href": "https://doi.org/10.1016/j.immuni.2013.01.015"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23684986"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23684986"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Dorien Verdoodt, Noa Peeleman, Krystyna Szewczyk, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cochlin Deficiency Protects Aged Mice from Noise-Induced Hearing Loss."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms222111549"}], "href": "https://doi.org/10.3390/ijms222111549"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34768980"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34768980"}]}]}]}
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| NCBI Gene ID | 143678 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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FREY1 has 332 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.
Click the + buttons to view associations for FREY1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of FREY1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of FREY1 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving FREY1 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing FREY1 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of FREY1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with FREY1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| IMPC Knockout Mouse Phenotypes | phenotypes of mice caused by FREY1 gene knockout from the IMPC Knockout Mouse Phenotypes dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of FREY1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of FREY1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of FREY1 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of FREY1 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of FREY1 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| WikiPathways Pathways 2024 | pathways involving FREY1 protein from the WikiPathways Pathways 2024 dataset. | |