| HGNC Family | Non-coding RNAs |
| Name | gastric cancer associated transcript 2 (non-protein coding) |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n GACAT2 is a long nonācoding RNA that has been implicated in distinct pathological contexts. In gastric cancer, studies have demonstrated that circulating plasma levels of GACAT2 are significantly elevated in preoperative patients compared with both postoperative patients and healthy subjects. Moreover, individual changes in plasma GACAT2 expression following surgery correlate with important prognostic features, including lymphatic metastasis, distal metastasis, and perineural invasion. These observations support the potential application of GACAT2 as a minimally invasive biomarker for screening and prognosis in gastric cancer patients."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In a separate context related to periodontal regeneration, GACAT2 has been identified as a critical regulator of mitochondrial function and cellular differentiation in periodontal ligament stem cells under inflammatory conditions. Mechanistic investigations revealed that GACAT2 directly binds to pyruvate kinase isoforms (PKM1/2), leading to increased expression of PKM1/2, enhanced formation of the PKM2 tetramer, and elevated levels of phosphorylated PKM2. This cascade boosts pyruvate kinase activity and promotes the translocation of PKM2 into mitochondria, thereby rescuing the inflammatory impairment of mitochondrial function and cementoblastic differentiation. Such findings indicate that GACAT2 plays an important role in modulating the cellular events required for cementogenesis in an inflammatory milieu."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, these studies suggest that GACAT2 functions in a dual capacity: as a promising circulating biomarker for the diagnosis and prognostication of gastric cancer, and as an important mediator of mitochondrial function and differentiation in stem cells subject to inflammation. This dual role underscores its potential as both a diagnostic indicator and a therapeutic target in disparate clinical settings.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Lin Tan, Yunben Yang, Yongfu Shao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Plasma lncRNA-GACAT2 is a valuable marker for the screening of gastric cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Lett (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ol.2016.5297"}], "href": "https://doi.org/10.3892/ol.2016.5297"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28105191"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28105191"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Xuan Li, Bei-Min Tian, Dao-Kun Deng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA GACAT2 binds with protein PKM1/2 to regulate cell mitochondrial function and cementogenesis in an inflammatory environment."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bone Res (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41413-022-00197-x"}], "href": "https://doi.org/10.1038/s41413-022-00197-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35296649"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35296649"}]}]}]}
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| Synonyms | MTCL1AS1, MTCL1-AS1 |
| NCBI Gene ID | 100287082 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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GACAT2 has 110 functional associations with biological entities spanning 2 categories (functional term, phrase or reference, cell line, cell type or tissue) extracted from 2 datasets.
Click the + buttons to view associations for GACAT2 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| GeneRIF Biological Term Annotations | biological terms co-occuring with GACAT2 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of GACAT2 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |