GARIN1B Gene

Name golgi associated RAB2 interactor 1B
Description Predicted to be involved in acrosome assembly and acrosome reaction. Predicted to be located in Golgi apparatus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n GARIN1B (also known as FAM71F1) is a testis‐enriched protein that plays a critical role during spermatogenesis. Its primary function involves the precise regulation of vesicle trafficking during acrosome formation by binding the GTP‐bound active forms of the small GTPases RAB2A and RAB2B. This interaction serves to suppress excessive vesicle fusion, thereby ensuring the proper morphogenesis of the acrosome and ultimately male fertility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition to its essential role in acrosome biogenesis, GARIN1B has also been implicated in broader cellular and pathological contexts. For example, gene expression studies in cutaneous T-cell lymphoma have identified GARIN1B among a panel of candidate target genes of the tumor-suppressive microRNA miR-26, suggesting that its dysregulation might contribute to oncogenic processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, comparative transcriptomic analyses in testicular biopsies from infertile men indicate that GARIN1B is significantly down-regulated in patients with nonobstructive azoospermia, underscoring its potential utility as a biomarker for the degree of spermatogenic impairment."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Finally, in an independent context, GARIN1B has emerged from integrative analyses as one of several m6A-related genes in a prognostic risk model for lung squamous cell carcinoma, highlighting its possible role in modulating tumor biology and patient outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Akane Morohoshi, Haruhiko Miyata, Yuki Oyama, et al. "}, {"type": "b", "children": [{"type": "t", "text": "FAM71F1 binds to RAB2A and RAB2B and is essential for acrosome formation and male fertility in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.199644"}], "href": "https://doi.org/10.1242/dev.199644"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34714330"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34714330"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yuka Matsuda, Sho Ikeda, Fumito Abe, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Downregulation of miR-26 promotes invasion and metastasis via targeting interleukin-22 in cutaneous T-cell lymphoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Sci (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/cas.15296"}], "href": "https://doi.org/10.1111/cas.15296"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35133054"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35133054"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Agnieszka Malcher, Natalia Rozwadowska, Tomasz Stokowy, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Potential biomarkers of nonobstructive azoospermia identified in microarray gene expression analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Fertil Steril (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.fertnstert.2013.07.1999"}], "href": "https://doi.org/10.1016/j.fertnstert.2013.07.1999"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24012201"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24012201"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Erna Jia, Na Ren, Bo Guo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Construction and validation of a novel prognostic model for lung squamous cell cancer based on N6-methyladenosine-related genes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "World J Surg Oncol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12957-022-02509-1"}], "href": "https://doi.org/10.1186/s12957-022-02509-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35220962"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35220962"}]}]}]}
NCBI Gene ID 84691
API
Download Associations
Predicted Functions View GARIN1B's ARCHS4 Predicted Functions.
Co-expressed Genes View GARIN1B's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View GARIN1B's ARCHS4 Predicted Functions.

Functional Associations

GARIN1B has 736 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 14 datasets.

Click the + buttons to view associations for GARIN1B from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of GARIN1B gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of GARIN1B gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing GARIN1B protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with GARIN1B protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of GARIN1B gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
IMPC Knockout Mouse Phenotypes phenotypes of mice caused by GARIN1B gene knockout from the IMPC Knockout Mouse Phenotypes dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of GARIN1B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of GARIN1B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of GARIN1B gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of GARIN1B gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of GARIN1B gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of GARIN1B protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of GARIN1B protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with GARIN1B protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.