GARIN2 Gene

Name golgi associated RAB2 interactor family member 2
Description Predicted to be involved in flagellated sperm motility. Predicted to act upstream of or within cell morphogenesis and vacuole organization. Predicted to be located in sperm midpiece. Predicted to be active in sperm head. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n FAM71D (also referred to here as GARIN2) appears to play distinct roles in both cancer cell biology and male reproductive physiology. In the context of prostate cancer, a fusion transcript involving FAM71D (the in‐frame MPP5–FAM71D fusion) was identified; its expression is essential for the proliferation of PC346C cancer cells, implicating it in oncogenic processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " \n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In contrast, FAM71D is predominantly a testis‐specific protein: its expression is developmentally regulated in the testis, with localization in spermatids and retention in the sperm flagella. Here, FAM71D interacts with calmodulin and is crucial for maintaining normal sperm motility. Antibody blocking assays that interfered with FAM71D function led to significant decreases in sperm motility, and reduced expression was correlated with impaired progressive motility in asthenozoospermic patients."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " \n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, evolutionary analyses indicate that FAM71D is subject to recent positive directional selection in human populations, suggesting its functional importance in spermatogenesis and fertilization may have adaptive significance."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " \n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings highlight that FAM71D fulfills a dual role: as part of fusion events that influence prostate cancer cell growth and as a key testis‐specific factor critical for sperm motility and potentially male fertility.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "I Teles Alves, T Hartjes, E McClellan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Next-generation sequencing reveals novel rare fusion events with functional implication in prostate cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/onc.2013.591"}], "href": "https://doi.org/10.1038/onc.2013.591"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24488012"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24488012"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Qian Ma, Yuchi Li, Manling Luo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The expression characteristics of FAM71D and its association with sperm motility."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Reprod (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/humrep/dex290"}], "href": "https://doi.org/10.1093/humrep/dex290"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29025071"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29025071"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Helmut Schaschl, Bernard Wallner "}, {"type": "b", "children": [{"type": "t", "text": "Population-specific, recent positive directional selection suggests adaptation of human male reproductive genes to different environmental conditions."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Evol Biol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12862-019-1575-0"}], "href": "https://doi.org/10.1186/s12862-019-1575-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32054438"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32054438"}]}]}]}
NCBI Gene ID 161142
API
Download Associations
Predicted Functions View GARIN2's ARCHS4 Predicted Functions.
Co-expressed Genes View GARIN2's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View GARIN2's ARCHS4 Predicted Functions.

Functional Associations

GARIN2 has 605 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.

Click the + buttons to view associations for GARIN2 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of GARIN2 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of GARIN2 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing GARIN2 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 cellular components containing GARIN2 protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with GARIN2 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of GARIN2 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with GARIN2 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
IMPC Knockout Mouse Phenotypes phenotypes of mice caused by GARIN2 gene knockout from the IMPC Knockout Mouse Phenotypes dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of GARIN2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of GARIN2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of GARIN2 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of GARIN2 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of GARIN2 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of GARIN2 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with GARIN2 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.