| Name | golgi associated RAB2B interactor family member 3 |
| Description | Predicted to act upstream of or within several processes, including acrosome assembly; single fertilization; and vacuole organization. Located in nucleus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n GARIN3 (also known as FAM71B) appears to function as a novel nuclear protein that plays dual roles in RNA biogenesis and in male germ cell development. On the one hand, studies in muscle cells revealed that GARIN3 localizes to nuclear speckles and Cajal bodies and interacts with key components of pre‐mRNA processing (including FRG1, SMN, and PABPN1), suggesting that it may participate in spliceosome assembly or related steps of RNA maturation and thereby contribute to the pathogenesis of neuromuscular disorders such as facioscapulohumeral muscular dystrophy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " On the other hand, GARIN3 is also detected in the male germline where its expression is restricted to germ cells and is associated with structures essential for spermiogenesis. Its stage-specific expression pattern and association with cytoskeletal components in sperm flagella point to a potential role in sperm differentiation and fertility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Silvana van Koningsbruggen, Kirsten R Straasheijm, Ellen Sterrenburg, et al. "}, {"type": "b", "children": [{"type": "t", "text": "FRG1P-mediated aggregation of proteins involved in pre-mRNA processing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Chromosoma (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00412-006-0083-3"}], "href": "https://doi.org/10.1007/s00412-006-0083-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17103222"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17103222"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Hannah-Ruth Engelbrecht, Shareefa Dalvie, Gloudi Agenbag, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Whole-exome sequencing in an Afrikaner family with bipolar disorder."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Affect Disord (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jad.2020.06.045"}], "href": "https://doi.org/10.1016/j.jad.2020.06.045"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32697718"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32697718"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Fabrice G Petit, Christine Kervarrec, Soazik P Jamin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Combining RNA and protein profiling data with network interactions identifies genes associated with spermatogenesis in mouse and human."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biol Reprod (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1095/biolreprod.114.126250"}], "href": "https://doi.org/10.1095/biolreprod.114.126250"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25609838"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25609838"}]}]}]}
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| NCBI Gene ID | 153745 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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GARIN3 has 265 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.
Click the + buttons to view associations for GARIN3 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of GARIN3 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of GARIN3 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing GARIN3 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with GARIN3 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing GARIN3 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of GARIN3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with GARIN3 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of GARIN3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of GARIN3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| MoTrPAC Rat Endurance Exercise Training | tissue samples with high or low expression of GARIN3 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of GARIN3 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of GARIN3 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of GARIN3 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of GARIN3 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of GARIN3 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with GARIN3 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |