| Name | golgi associated RAB2 interactor family member 4 |
| Description | This gene encodes a protein that interacts with the Rab2B small GTPase and may be important for integrity of the Golgi body. A knockdown of this gene induces fragmentation of the Golgi, similar to the effect seen with a knockdown of the Rab2B small GTPase. The encoded protein has an N-terminal Rab-binding domain specific for Rab2B. [provided by RefSeq, Feb 2017] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Two independent studies have characterized Golgi‐associated Rab2B effector proteins that are crucial for both maintaining Golgi structure and modulating innate immune signaling. In one study, a protein designated as “Golgi‐associated Rab2B interactor‐like 4” (which we refer to here as GARIN4) was identified as a novel, Golgi‐resident binding partner specific for Rab2B. Loss‐of‐function experiments revealed that knockdown of GARIN4 produced a fragmented Golgi apparatus—phenocopying the effects observed when individual Rab isoforms were silenced—thus underscoring its critical role in preserving the compact morphology of the Golgi complex in mammalian cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In a related study focusing on antiviral responses, the small GTPase RAB2B was shown to recruit a distinct effector protein, Golgi‐associated Rab2B interactor‐like 5 (GARIL5), to the Golgi apparatus following cytosolic DNA stimulation. Although GARIL5 is a separate entity from GARIN4, its characterization reinforces the paradigm that Rab2B effectors localized at the Golgi not only modulate Golgi integrity but also serve as platforms for assembling signaling complexes—for example, those involved in the cGAS–STING pathway that drives interferon responses against DNA viruses."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, these findings illuminate the multifaceted roles of Golgi-associated Rab2B effector proteins. Specifically, GARIN4 appears to be indispensable for maintaining Golgi structure, likely acting through isoform-specific interactions with Rab2B and distinct effector complexes, whereas related proteins like GARIL5 participate in innate immune signaling. This emerging functional diversity among Rab2B interactors highlights how spatial regulation at the Golgi underpins both organelle homeostasis and host defense mechanisms.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Megumi Aizawa, Mitsunori Fukuda "}, {"type": "b", "children": [{"type": "t", "text": "Small GTPase Rab2B and Its Specific Binding Protein Golgi-associated Rab2B Interactor-like 4 (GARI-L4) Regulate Golgi Morphology."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M115.669242"}], "href": "https://doi.org/10.1074/jbc.M115.669242"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26209634"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26209634"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Michihiro Takahama, Mitsunori Fukuda, Norihiko Ohbayashi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The RAB2B-GARIL5 Complex Promotes Cytosolic DNA-Induced Innate Immune Responses."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2017.08.085"}], "href": "https://doi.org/10.1016/j.celrep.2017.08.085"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28930687"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28930687"}]}]}]}
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| NCBI Gene ID | 149647 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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GARIN4 has 531 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.
Click the + buttons to view associations for GARIN4 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of GARIN4 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of GARIN4 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing GARIN4 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with GARIN4 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving GARIN4 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing GARIN4 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of GARIN4 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with GARIN4 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of GARIN4 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of GARIN4 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of GARIN4 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of GARIN4 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of GARIN4 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of GARIN4 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of GARIN4 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with GARIN4 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |