GARIN5B Gene

Name golgi associated RAB2 interactor family member 5B
Description Predicted to act upstream of or within cell morphogenesis; single fertilization; and vacuole organization. Predicted to be active in sperm head. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n GARIN5B appears to play a role in maintaining genomic stability. One study focused on a gene at the 19p13 locus—C19orf62, whose encoded protein is a pivotal component of the DNA damage repair machinery—and, although deleterious mutations were not frequently detected in cohorts of breast cancer patients, its presumed essential function in repairing damaged DNA suggests that GARIN5B (which may be functionally related or analogously implicated) is important for protecting the genome from oncogenic insults."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In a separate investigation applying whole‐exome sequencing to cases of severe early‐onset obesity, damaging variants in genes that influence energy metabolism and cellular regulatory functions were identified. Although this study primarily highlighted other obesity‐associated genes, the interrogation of variant impacts on complex metabolic processes underscores how multifaceted genetic factors—potentially including GARIN5B—might contribute to disease when their function is compromised."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Furthermore, the development of PepPSy—a gene expression‐based prioritization system intended to guide the reannotation and targeted discovery of proteins with uncertain validation—illustrates the importance of robust bioinformatics tools in linking computational predictions with biological function. Such systems are valuable for prioritizing candidates like GARIN5B for further experimental scrutiny and determining the specific tissues in which their protein products are active."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, GARIN5B is implicated as a gene whose conserved role in DNA damage repair and potential involvement in broader cellular regulatory networks may contribute to cancer risk and metabolic disease susceptibility. Comprehensive genetic, biochemical, and bioinformatics approaches will be essential to fully delineate its function and clinical significance.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yonglan Zheng, Jing Zhang, Qun Niu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Germline mutational analysis of the C19orf62 gene in African-American women with breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Breast Cancer Res Treat (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10549-011-1445-y"}], "href": "https://doi.org/10.1007/s10549-011-1445-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21431873"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21431873"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Gilberto Paz-Filho, Margaret C S Boguszewski, Claudio A Mastronardi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Whole exome sequencing of extreme morbid obesity patients: translational implications for obesity and related disorders."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes (Basel) (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/genes5030709"}], "href": "https://doi.org/10.3390/genes5030709"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25158045"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25158045"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Olivier Sallou, Paula D Duek, Thomas A Darde, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PepPSy: a web server to prioritize gene products in experimental and biocuration workflows."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Database (Oxford) (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/database/baw070"}], "href": "https://doi.org/10.1093/database/baw070"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27173522"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27173522"}]}]}]}
NCBI Gene ID 284418
API
Download Associations
Predicted Functions View GARIN5B's ARCHS4 Predicted Functions.
Co-expressed Genes View GARIN5B's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View GARIN5B's ARCHS4 Predicted Functions.

Functional Associations

GARIN5B has 343 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 13 datasets.

Click the + buttons to view associations for GARIN5B from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of GARIN5B gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of GARIN5B gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with GARIN5B protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of GARIN5B gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of GARIN5B gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with GARIN5B gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of GARIN5B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of GARIN5B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of GARIN5B gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of GARIN5B gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of GARIN5B gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of GARIN5B protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with GARIN5B protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.