GATA3-AS1 Gene

Name GATA3 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long non‐coding RNA GATA3‑AS1 has emerged as a multifunctional regulatory molecule with diverse roles in cancer and other physiological processes. In triple‐negative breast cancer, GATA3‑AS1 is markedly overexpressed and contributes to tumor progression and immune evasion by promoting the deubiquitination and stabilization of PD‑L1, while simultaneously facilitating the ubiquitination‐mediated degradation of GATA3, thereby impairing anti‐tumor immunity and enhancing cell growth."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Similarly, in pancreatic cancer, upregulation of GATA3‑AS1 promotes cell viability, proliferation, invasion, and stemness, with its silencing leading to significant reductions in these malignant properties."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In breast cancer patients undergoing neoadjuvant chemotherapy, high levels of GATA3‑AS1 have been identified as an independent predictive biomarker of nonresponse, underscoring its clinical utility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Moreover, in hepatocellular carcinoma, elevated GATA3‑AS1 expression is associated with aggressive tumor features, while its knockdown restores tumor‐suppressive gene expression and impairs cancer cell proliferation and migration."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Beyond solid tumors, aberrant hypermethylation of the GATA3‑AS1 promoter in chorionic villi from trisomy 16 miscarriages correlates with reduced GATA3 protein expression, suggesting a role in placental development and trophoblast differentiation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " In addition, a genetic variant near GATA3‑AS1 has been implicated in modulating the perception and liking of dietary fat, highlighting its potential involvement in broader physiological processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Finally, elevated expression of GATA3‑AS1 in placental tissues has also been shown to have prognostic value in early‐onset preeclampsia, further emphasizing its multifaceted regulatory role."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ming Zhang, Ning Wang, Peng Song, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA GATA3-AS1 facilitates tumour progression and immune escape in triple-negative breast cancer through destabilization of GATA3 but stabilization of PD-L1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Prolif (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/cpr.12855"}], "href": "https://doi.org/10.1111/cpr.12855"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32687248"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32687248"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yuhong Liu, Gang Xu, Lin Li "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA GATA3‑AS1‑miR‑30b‑5p‑Tex10 axis modulates tumorigenesis in pancreatic cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/or.2021.8010"}], "href": "https://doi.org/10.3892/or.2021.8010"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33760161"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33760161"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Laura Contreras-Espinosa, Nicolás Alcaraz, Inti A De La Rosa-Velázquez, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcriptome Analysis Identifies GATA3-AS1 as a Long Noncoding RNA Associated with Resistance to Neoadjuvant Chemotherapy in Locally Advanced Breast Cancer Patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Diagn (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jmoldx.2021.07.014"}], "href": "https://doi.org/10.1016/j.jmoldx.2021.07.014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34358678"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34358678"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xuee Luo, Ning Zhou, Le Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Noncoding RNA GATA3-AS1 Promotes Cell Proliferation and Metastasis in Hepatocellular Carcinoma by Suppression of PTEN, CDKN1A, and TP53."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Can J Gastroenterol Hepatol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2019/1389653"}], "href": "https://doi.org/10.1155/2019/1389653"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31871924"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31871924"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Ekaterina N Tolmacheva, Stanislav A Vasilyev, Tatiana V Nikitina, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of differentially methylated genes in first-trimester placentas with trisomy 16."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-021-04107-9"}], "href": "https://doi.org/10.1038/s41598-021-04107-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35064135"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35064135"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Cailu Lin, Lauren Colquitt, Paul Wise, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Studies of human twins reveal genetic variation that affects dietary fat perception."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Chem Senses (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/chemse/bjaa036"}], "href": "https://doi.org/10.1093/chemse/bjaa036"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32516399"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32516399"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Zhan Zhang, Ping Wang, Linlin Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of Key Genes and Long Noncoding RNA-Associated Competing Endogenous RNA (ceRNA) Networks in Early-Onset Preeclampsia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Res Int (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2020/1673486"}], "href": "https://doi.org/10.1155/2020/1673486"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32566660"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32566660"}]}]}]}
NCBI Gene ID 399717
API
Download Associations
Predicted Functions View GATA3-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View GATA3-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View GATA3-AS1's ARCHS4 Predicted Functions.

Functional Associations

GATA3-AS1 has 258 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.

Click the + buttons to view associations for GATA3-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of GATA3-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of GATA3-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of GATA3-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
dbGAP Gene-Trait Associations traits associated with GATA3-AS1 gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of GATA3-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of GATA3-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with GATA3-AS1 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of GATA3-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain GATA3-AS1 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of GATA3-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of GATA3-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.