GATA6-AS1 Gene

Name GATA6 antisense RNA 1 (head to head)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n GATA6‐AS1 is an evolutionarily conserved long noncoding RNA transcribed in a divergent orientation from the cardiac transcription factor GATA6 that plays multifaceted roles in both normal development and tumorigenesis. In developmental contexts, GATA6‐AS1 is robustly expressed during human definitive endoderm differentiation and cardiomyocyte specification, where it acts to upregulate its neighboring gene GATA6 by interacting with transcriptional regulators (such as SMAD2/3) to drive lineage‐specific gene expression (see."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": " In contrast, a number of studies in distinct cancer types including lung adenocarcinoma, non‐small cell lung cancer, lung squamous cell carcinoma, gastric cancer and ovarian cancer have demonstrated that GATA6‐AS1 is frequently downregulated and functions as a tumor suppressor. In these malignancies, restoration of GATA6‐AS1 expression leads to inhibition of cell proliferation, migration, invasion and epithelial–mesenchymal transition, with molecular mechanisms that include acting as a competitive endogenous RNA to sequester oncogenic microRNAs (for instance, miR‐4530 in lung adenocarcinoma, miR‐19a‐5p in ovarian cancer and miR‐324‐5p in lung cancer) as well as modulating critical signaling pathways such as the Wnt/β‐catenin and MAPK cascades."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "9"}]}, {"type": "t", "text": " Moreover, in pancreatic ductal adenocarcinoma and lung squamous cell carcinoma, its expression levels correlate with patient survival, underscoring its potential as a prognostic biomarker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": " Additional evidence points to roles in chromatin organization and epigenetic regulation, suggesting that GATA6‐AS1 may also influence transcriptional landscapes by recruiting chromatin modifiers."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": " Finally, integrative functional characterization in cardiovascular disease models further supports its significant role in heart biology."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jie Yang, Pei Lu, Mao Li, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "A long non-coding RNA GATA6-AS1 adjacent to GATA6 is required for cardiomyocyte differentiation from human pluripotent stem cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FASEB J (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1096/fj.202000206R"}], "href": "https://doi.org/10.1096/fj.202000206R"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32888237"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32888237"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Zhi Liu, Juncheng Dai, Hongbing Shen "}, {"type": "b", "children": [{"type": "t", "text": "Systematic analysis reveals long noncoding RNAs regulating neighboring transcription factors in human cancers."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta Mol Basis Dis (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbadis.2018.05.006"}], "href": "https://doi.org/10.1016/j.bbadis.2018.05.006"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29753811"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29753811"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Honggang Kang, Dan Ma, Jing Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA GATA6-AS1 upregulates GATA6 to regulate the biological behaviors of lung adenocarcinoma cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Pulm Med (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12890-021-01521-7"}], "href": "https://doi.org/10.1186/s12890-021-01521-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33992085"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33992085"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Hua Xu, Xiao Wang, Yinghong Zhang, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Long Non-Coding RNA GATA6-AS1 Sponges miR-324-5p to Inhibit Lung Cancer Cell Proliferation and Invasion."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Onco Targets Ther (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/OTT.S256336"}], "href": "https://doi.org/10.2147/OTT.S256336"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33061453"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33061453"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Zheng-Tian Li, Xu Zhang, Da-Wei Wang, et al. 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Synonyms LOCUS5689, BM742401
NCBI Gene ID 100128893
API
Download Associations
Predicted Functions View GATA6-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View GATA6-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View GATA6-AS1's ARCHS4 Predicted Functions.

Functional Associations

GATA6-AS1 has 721 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.

Click the + buttons to view associations for GATA6-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CellMarker Gene-Cell Type Associations cell types associated with GATA6-AS1 gene from the CellMarker Gene-Cell Type Associations dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of GATA6-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of GATA6-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of GATA6-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of GATA6-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of GATA6-AS1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of GATA6-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.