GCNA Gene

Name germ cell nuclear acidic peptidase
Description Enables SUMO polymer binding activity. Involved in protein-DNA covalent cross-linking repair. Located in PML body. Implicated in X-linked spermatogenic failure 4. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have demonstrated that the germ‐cell nuclear antigen (GCNA) is not only a robust marker of the germline but also plays an essential functional role in maintaining genome integrity during meiosis. GCNA is highly expressed in early germ cells—present in prospermatogonia, spermatogonia, and early spermatocytes—with its expression typically declining as germ cells differentiate. Such a defined spatial and temporal expression pattern indicates that GCNA is intimately associated with key developmental transitions within the germ cell lineage."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Moreover, genomic analyses in both animal models and human patients have revealed that pathogenic variants in the X‐linked GCNA gene—ranging from early frameshift (stop gain) mutations to functionally disruptive missense substitutions within conserved domains—are associated with severe spermatogenic failure (including azoospermia and oligo‐astheno‐terato‐zoospermia). These mutations likely compromise the protein’s ability to safeguard genome integrity during the extensive mitotic and meiotic divisions of male germ cells, ultimately leading to germ cell arrest and infertility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, GCNA functions as a critical genome integrity factor during germ cell division while also serving as a developmental marker throughout early gametogenesis. Disruption of GCNA structure and/or function can arrest germ cell division, underscoring its pivotal role in proper germline development and male fertility.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "G C Enders, J J May "}, {"type": "b", "children": [{"type": "t", "text": "Developmentally regulated expression of a mouse germ cell nuclear antigen examined from embryonic day 11 to adult in male and female mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (1994)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1006/dbio.1994.1152"}], "href": "https://doi.org/10.1006/dbio.1994.1152"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "8200475"}], "href": "https://pubmed.ncbi.nlm.nih.gov/8200475"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "D Wang, G C Enders "}, {"type": "b", "children": [{"type": "t", "text": "Expression of a specific mouse germ cell nuclear antigen (GCNA1) by early embryonic testicular teratoma cells in 129/Sv-Sl/+ mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Lett (1996)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/0304-3835(95)04068-4"}], "href": "https://doi.org/10.1016/0304-3835(95"}, {"type": "t", "text": "04068-4) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "8620450"}], "href": "https://pubmed.ncbi.nlm.nih.gov/8620450"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jimmaline J Hardy, Margot J Wyrwoll, William Mcfadden, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Variants in GCNA, X-linked germ-cell genome integrity gene, identified in men with primary spermatogenic failure."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Genet (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00439-021-02287-y"}], "href": "https://doi.org/10.1007/s00439-021-02287-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33963445"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33963445"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Maram Arafat, Sandra E Kleiman, Ali AbuMadighem, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pathogenic variations in Germ Cell Nuclear Acidic Peptidase (GCNA) are associated with human male infertility."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Hum Genet (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41431-021-00946-2"}], "href": "https://doi.org/10.1038/s41431-021-00946-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34413498"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34413498"}]}]}]}
NCBI Gene ID 93953
API
Download Associations
Predicted Functions View GCNA's ARCHS4 Predicted Functions.
Co-expressed Genes View GCNA's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View GCNA's ARCHS4 Predicted Functions.

Functional Associations

GCNA has 985 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 21 datasets.

Click the + buttons to view associations for GCNA from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of GCNA gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with GCNA gene from the CellMarker Gene-Cell Type Associations dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of GCNA gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing GCNA protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 cellular components containing GCNA protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with GCNA protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with GCNA gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2025 biological processes involving GCNA gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2025 cellular components containing GCNA protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by GCNA gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of GCNA gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of GCNA gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of GCNA gene from the NIBR DRUG-seq U2OS MoA Box dataset.
PFOCR Pathway Figure Associations 2024 pathways involving GCNA protein from the Wikipathways PFOCR 2024 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of GCNA gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of GCNA gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of GCNA gene from the RummaGEO Gene Perturbation Signatures dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of GCNA gene from the Sci-Plex Drug Perturbation Signatures dataset.
Tahoe Therapeutics Tahoe 100M Perturbation Atlas drug perturbations changing expression of GCNA gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of GCNA protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with GCNA protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.