GGTA1 Gene

Name glycoprotein alpha-galactosyltransferase 1 (inactive)
Description Alpha-1,3-galactosyltransferase (GGTA1) is an enzyme present in most mammals except man, apes, and Old World monkeys. This gene is thought to encode a truncated, non-enzymatic form of the GGTA1 protein that lacks the C-terminal catalytic domain. Aberrant expression of the GGTA1 protein in man can lead to autoimmune diseases and sometimes germ cell tumors. [provided by RefSeq, May 2020]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe GGTA1 gene encodes the enzyme α1,3-galactosyltransferase, which is responsible for the synthesis of Galα1-3Gal (αGal) epitopes—a set of carbohydrate markers present on the cell surfaces of most mammals. In higher primates, including humans, these epitopes are absent due to multiple critical mutations in the GGTA1 coding region, leading to the production of anti-αGal antibodies. Detailed studies have demonstrated that, despite the functional promoter in species such as the rhesus monkey, evolving point mutations and regulatory changes have rendered the gene inactive in higher primates, thereby contributing to the evolutionary loss of αGal expression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the context of xenotransplantation, the enzymatic function of GGTA1 becomes particularly significant. Genetically engineered pigs that have been modified to knock out the GGTA1 gene show a reduction in the synthesis of these immunogenic αGal epitopes, which in turn diminishes the binding of human antibodies and improves cell survival when challenged by human immune components. This modification highlights the potential of targeting GGTA1 to minimize xenograft rejection, although some residual antibody binding remains an obstacle to complete graft acceptance."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMolecular investigations into the human GGTA1 sequence have revealed that it exists as a pseudogene, marked by premature transcriptional termination that results in truncated, nonfunctional mRNAs. These aberrant transcripts lack the necessary catalytic exons to produce an active enzyme, solidifying the absence of αGal synthesis in human tissues. The identified premature stop signals and ectopic splicing events provide a mechanistic explanation for the evolutionary divergence in αGal expression between primates and other mammals."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Chihiro Koike, John J Fung, David A Geller, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Molecular basis of evolutionary loss of the alpha 1,3-galactosyltransferase gene in higher primates."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M110527200"}], "href": "https://doi.org/10.1074/jbc.M110527200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11773054"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11773054"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Christopher Burlak, Marshall Bern, Alejandro E Brito, et al. "}, {"type": "b", "children": [{"type": "t", "text": "N-linked glycan profiling of GGTA1/CMAH knockout pigs identifies new potential carbohydrate xenoantigens."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Xenotransplantation (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/xen.12047"}], "href": "https://doi.org/10.1111/xen.12047"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24033743"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24033743"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Marion Lantéri, Valérie Giordanengo, Frédérique Vidal, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A complete alpha1,3-galactosyltransferase gene is present in the human genome and partially transcribed."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Glycobiology (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/glycob/cwf087"}], "href": "https://doi.org/10.1093/glycob/cwf087"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12499400"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12499400"}]}]}]}
NCBI Gene ID 2681
API
Download Associations
Predicted Functions View GGTA1's ARCHS4 Predicted Functions.
Co-expressed Genes View GGTA1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View GGTA1's ARCHS4 Predicted Functions.

Functional Associations

GGTA1 has 1,579 functional associations with biological entities spanning 6 categories (disease, phenotype or trait, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 20 datasets.

Click the + buttons to view associations for GGTA1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of GGTA1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with GGTA1 gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of GGTA1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of GGTA1 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
DisGeNET Gene-Disease Associations diseases associated with GGTA1 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
DisGeNET Gene-Phenotype Associations phenotypes associated with GGTA1 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.
GO Biological Process Annotations 2023 biological processes involving GGTA1 gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving GGTA1 gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2023 cellular components containing GGTA1 protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing GGTA1 protein from the curated GO Cellular Component Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of GGTA1 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of GGTA1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of GGTA1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of GGTA1 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by GGTA1 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of GGTA1 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
PFOCR Pathway Figure Associations 2024 pathways involving GGTA1 protein from the Wikipathways PFOCR 2024 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of GGTA1 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of GGTA1 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of GGTA1 gene from the RummaGEO Gene Perturbation Signatures dataset.