GRAMD2A Gene

Name GRAM domain containing 2A
Description Enables phosphatidylinositol-4,5-bisphosphate binding activity. Involved in endoplasmic reticulum-plasma membrane tethering and regulation of store-operated calcium entry. Located in endoplasmic reticulum membrane; organelle membrane contact site; and plasma membrane. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n GRAMD2A is a GRAM‐domain–containing protein that plays a central role in organizing specialized membrane contact sites between the endoplasmic reticulum (ER) and the plasma membrane (PM). Studies have demonstrated that GRAMD2A localizes to ER–PM contact sites where it co‐localizes with tether proteins such as E‐Syt2/3 in a phosphoinositide‐dependent manner. In these domains—particularly those enriched in PI(4,5)P2—GRAMD2A pre‐marks regions that are subsequently used for efficient recruitment of STIM1, thereby contributing to the regulation of calcium homeostasis and other pleiotropic functions at the ER–PM interface."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition to its role as a structural organizer at contact sites, GRAMD2A (or its related family member designated GRAMD2) is subject to epigenetic regulation; for example, maternal preconception fatty acid levels have been associated with increased methylation at the GRAMD2 gene, suggesting that nutritional exposures may influence its expression and downstream cellular functions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Moreover, GRAMD2 has been identified as a highly specific marker of alveolar epithelial type I (AT1) cells in the lung, underscoring its potential role in cell identity and offering a novel tool for isolating and studying these cells in the context of distal lung diseases."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " \n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, GRAMD2A functions as an organizer of ER–PM membrane contact sites that are critical for calcium signaling and cellular homeostasis. Its regulation by nutritional factors and selective expression in specific cell types further highlights its diverse roles in cellular physiology.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Marina Besprozvannaya, Eamonn Dickson, Hao Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "GRAM domain proteins specialize functionally distinct ER-PM contact sites in human cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.31019"}], "href": "https://doi.org/10.7554/eLife.31019"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29469807"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29469807"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Paula Nunes, Nicolas Demaurex "}, {"type": "b", "children": [{"type": "t", "text": "GRAM marks the spot for STIM. Commentary on \"GRAM domain proteins specialize functionally distinct ER-PM contact sites in human cells\"."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Calcium (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ceca.2018.04.002"}], "href": "https://doi.org/10.1016/j.ceca.2018.04.002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29684786"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29684786"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Sonia L Robinson, Sunni L Mumford, Weihua Guan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Maternal fatty acid concentrations and newborn DNA methylation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Clin Nutr (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/ajcn/nqz311"}], "href": "https://doi.org/10.1093/ajcn/nqz311"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31858113"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31858113"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Crystal N Marconett, Beiyun Zhou, Mitsuhiro Sunohara, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cross-Species Transcriptome Profiling Identifies New Alveolar Epithelial Type I Cell-Specific Genes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Respir Cell Mol Biol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1165/rcmb.2016-0071OC"}], "href": "https://doi.org/10.1165/rcmb.2016-0071OC"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27749084"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27749084"}]}]}]}
NCBI Gene ID 196996
API
Download Associations
Predicted Functions View GRAMD2A's ARCHS4 Predicted Functions.
Co-expressed Genes View GRAMD2A's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View GRAMD2A's ARCHS4 Predicted Functions.

Functional Associations

GRAMD2A has 1,092 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 32 datasets.

Click the + buttons to view associations for GRAMD2A from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of GRAMD2A gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with GRAMD2A gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of GRAMD2A gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of GRAMD2A gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing GRAMD2A protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 cellular components containing GRAMD2A protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with GRAMD2A protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DeepCoverMOA Drug Mechanisms of Action small molecule perturbations with high or low expression of GRAMD2A protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by GRAMD2A gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with GRAMD2A gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2023 biological processes involving GRAMD2A gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving GRAMD2A gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2023 cellular components containing GRAMD2A protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing GRAMD2A protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by GRAMD2A gene from the curated GO Molecular Function Annotations 2023 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by GRAMD2A gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of GRAMD2A gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of GRAMD2A gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with GRAMD2A gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
HuBMAP ASCT+B Annotations cell types associated with GRAMD2A gene from the HuBMAP ASCT+B dataset.
HuBMAP ASCT+B Augmented with RNA-seq Coexpression cell types associated with GRAMD2A gene from the HuBMAP ASCT+B Augmented with RNA-seq Coexpression dataset.
IMPC Knockout Mouse Phenotypes phenotypes of mice caused by GRAMD2A gene knockout from the IMPC Knockout Mouse Phenotypes dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of GRAMD2A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of GRAMD2A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by GRAMD2A gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of GRAMD2A gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of GRAMD2A gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of GRAMD2A gene from the RummaGEO Gene Perturbation Signatures dataset.
Tahoe Therapeutics Tahoe 100M Perturbation Atlas drug perturbations changing expression of GRAMD2A gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of GRAMD2A protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of GRAMD2A protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with GRAMD2A protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.