H1-7 Gene

Name H1.7 linker histone
Description Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Nucleosomes consist of approximately 146 bp of DNA wrapped around a histone octamer composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin fiber is further compacted through the interaction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures. This gene is intronless and encodes a replication-independent histone that is a member of the histone H1 family. The related mouse gene encodes a testis specific protein that is required for spermatogenesis and male fertility. [provided by RefSeq, Oct 2015]
Summary
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These proteins are critical for the replacement of canonical histones by protamines, proper chromatin condensation, and overall sperm nuclear shaping; disruption of these variants leads to delayed nuclear condensation, abnormal sperm morphology, and male infertility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In somatic and cancer cells, multiple H1 isoforms (for example, H1.0, H1.2, H1c, H1d, H1X) are differentially distributed along the genome. Their relative abundance in gene‐rich or repeat‐rich regions helps to shape distinct epigenetic landscapes that correlate with transcriptional activity. For example, lower occupancy of H1.2 at transcription start sites is associated with active genes, whereas enrichment of certain H1 variants in repressed or lamina‐associated domains appears linked to gene silencing. In highly heterogeneous tumor samples, fluctuating levels of H1.0 have been linked to epigenetic states that control long‐term proliferative potential, implying that H1 variants can act as both markers and regulators of cell differentiation and self‐renewal."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n At the molecular level, post‐translational modifications of H1 proteins further diversify their functions. Methylation of specific lysine residues on H1 (for example, H1K26me2) is recognized by chromodomain‐containing proteins such as Cbx3, thereby linking H1 modification to the regulation of broader chromatin states and gene expression programs."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Biochemical and structural studies have underlined that various H1 variants exhibit differences in their affinities for nucleosomes and their capacities to induce higher‐order chromatin folding. Such differences are reflected in their distinct in vivo binding patterns and regulatory outcomes—ranging from the stabilization of pericentric heterochromatin in embryonic stem cells to the suppression of aberrant gene expression in differentiated and cancer cells. In particular, combined depletion of certain variants (for example, H1.2 and H1.4) can lead to genome‐wide chromatin de‐repression and an ensuing interferon response, underscoring the nonredundant, regulatory functions of individual H1 subtypes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Reviews and structural analyses further emphasize that the various H1 isoforms not only contribute to the physical compaction of chromatin but also serve as important mediators of epigenetic regulation, DNA replication, repair, and genome stability in health and disease."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, the H1 family (often referred to collectively as “H1–7” when considering the seven major subtypes found in human somatic cells) functions as an essential architectural and regulatory component of chromatin. Its variants, through cell type–specific expression, differential genomic distribution, and specialized post‐translational modifications, directly influence chromatin compaction, transcriptional activity, and cell fate decisions in contexts as diverse as spermiogenesis and tumor epigenetics.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Igor Martianov, Stefano Brancorsini, Raffaella Catena, et al. 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NCBI Gene ID 341567
API
Download Associations
Predicted Functions View H1-7's ARCHS4 Predicted Functions.
Co-expressed Genes View H1-7's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View H1-7's ARCHS4 Predicted Functions.

Functional Associations

H1-7 has 444 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 21 datasets.

Click the + buttons to view associations for H1-7 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of H1-7 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with H1-7 gene from the CellMarker Gene-Cell Type Associations dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of H1-7 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing H1-7 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with H1-7 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with H1-7 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2025 biological processes involving H1-7 gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2025 cellular components containing H1-7 protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by H1-7 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of H1-7 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of H1-7 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with H1-7 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of H1-7 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of H1-7 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
PFOCR Pathway Figure Associations 2024 pathways involving H1-7 protein from the Wikipathways PFOCR 2024 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of H1-7 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of H1-7 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of H1-7 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of H1-7 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of H1-7 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with H1-7 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.