Name | H2A.X variant histone |
Description | Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene encodes a replication-independent histone that is a member of the histone H2A family, and generates two transcripts through the use of the conserved stem-loop termination motif, and the polyA addition motif. [provided by RefSeq, Oct 2015] |
Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Histone variant H2AX is a central mediator of the DNA damage response, functioning as an early signaling platform that couples chromatin modifications to DNA repair. In response to double‐strand breaks, H2AX becomes rapidly phosphorylated on serine 139 (γ–H2AX), which in turn promotes the assembly and retention of repair proteins—including MDC1, Nbs1, and 53BP1—at sites of damage, thereby facilitating both checkpoint activation and efficient repair processes."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond serving as a recruitment platform, H2AX contributes to genomic stability as a dosage‐dependent “caretaker” that prevents aberrant repair and chromosomal translocations. Loss or haploinsufficiency of H2AX leads to compromised genomic integrity and increased tumorigenesis, underscoring its importance in suppressing cancer development."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n H2AX is also implicated in specialized chromatin remodeling events. For instance, its phosphorylation is required for proper sex chromosome condensation and meiotic sex chromosome inactivation during spermatogenesis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": ", while regulation of its phosphorylation status—involving factors that modulate both serine and tyrosine residues—can influence the balance between engaging DNA repair and promoting apoptotic pathways. Recent studies have revealed that dynamic changes in the H2AX phosphorylation status, including dephosphorylation of a constitutive tyrosine (Tyr142) by damage‐responsive phosphatases such as EYA, as well as its phosphorylation by kinases that harbor unconventional kinase domains (e.g. WSTF), serve as critical molecular switches in this decision‐making process."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Thus, H2AX functions not only as a marker of DNA damage but also as an active regulator of chromatin structure and DNA repair factor assembly, ensuring genome integrity and proper cell fate decisions following genotoxic stress.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Arkady Celeste, Simone Petersen, Peter J Romanienko, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genomic instability in mice lacking histone H2AX."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Science (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/science.1069398"}], "href": "https://doi.org/10.1126/science.1069398"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11934988"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11934988"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Oscar Fernandez-Capetillo, Alicia Lee, Michel Nussenzweig, et al. "}, {"type": "b", "children": [{"type": "t", "text": "H2AX: the histone guardian of the genome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "DNA Repair (Amst) (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.dnarep.2004.03.024"}], "href": "https://doi.org/10.1016/j.dnarep.2004.03.024"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15279782"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15279782"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Arkady Celeste, Oscar Fernandez-Capetillo, Michael J Kruhlak, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Histone H2AX phosphorylation is dispensable for the initial recognition of DNA breaks."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Cell Biol (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncb1004"}], "href": "https://doi.org/10.1038/ncb1004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12792649"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12792649"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Grant S Stewart, Bin Wang, Colin R Bignell, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MDC1 is a mediator of the mammalian DNA damage checkpoint."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature01446"}], "href": "https://doi.org/10.1038/nature01446"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12607005"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12607005"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Arkady Celeste, Simone Difilippantonio, Michael J Difilippantonio, et al. "}, {"type": "b", "children": [{"type": "t", "text": "H2AX haploinsufficiency modifies genomic stability and tumor susceptibility."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0092-8674(03)00567-1"}], "href": "https://doi.org/10.1016/s0092-8674(03"}, {"type": "t", "text": "00567-1) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12914701"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12914701"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Craig H Bassing, Heikyung Suh, David O Ferguson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Histone H2AX: a dosage-dependent suppressor of oncogenic translocations and tumors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0092-8674(03)00566-x"}], "href": "https://doi.org/10.1016/s0092-8674(03"}, {"type": "t", "text": "00566-x) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12914700"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12914700"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Oscar Fernandez-Capetillo, Shantha K Mahadevaiah, Arkady Celeste, et al. "}, {"type": "b", "children": [{"type": "t", "text": "H2AX is required for chromatin remodeling and inactivation of sex chromosomes in male mouse meiosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Cell (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s1534-5807(03)00093-5"}], "href": "https://doi.org/10.1016/s1534-5807(03"}, {"type": "t", "text": "00093-5) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12689589"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12689589"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Nabieh Ayoub, Anand D Jeyasekharan, Juan A Bernal, et al. "}, {"type": "b", "children": [{"type": "t", "text": "HP1-beta mobilization promotes chromatin changes that initiate the DNA damage response."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature06875"}], "href": "https://doi.org/10.1038/nature06875"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18438399"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18438399"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Peter J Cook, Bong Gun Ju, Francesca Telese, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Tyrosine dephosphorylation of H2AX modulates apoptosis and survival decisions."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature07849"}], "href": "https://doi.org/10.1038/nature07849"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19234442"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19234442"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Andrew Xiao, Haitao Li, David Shechter, et al. "}, {"type": "b", "children": [{"type": "t", "text": "WSTF regulates the H2A.X DNA damage response via a novel tyrosine kinase activity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature07668"}], "href": "https://doi.org/10.1038/nature07668"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19092802"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19092802"}]}]}]}
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NCBI Gene ID | 3014 |
API | |
Download Associations | |
Predicted Functions |
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Co-expressed Genes |
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Expression in Tissues and Cell Lines |
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H2AX has 4,879 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 31 datasets.
Click the + buttons to view associations for H2AX from the datasets below.
If available, associations are ranked by standardized value
Dataset | Summary | |
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CCLE Cell Line Proteomics | Cell lines associated with H2AX protein from the CCLE Cell Line Proteomics dataset. | |
CellMarker Gene-Cell Type Associations | cell types associated with H2AX gene from the CellMarker Gene-Cell Type Associations dataset. | |
ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of H2AX gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing H2AX protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with H2AX protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 | diseases associated with H2AX gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset. | |
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with H2AX gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
DisGeNET Gene-Disease Associations | diseases associated with H2AX gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset. | |
DisGeNET Gene-Phenotype Associations | phenotypes associated with H2AX gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset. | |
GO Biological Process Annotations 2023 | biological processes involving H2AX gene from the curated GO Biological Process Annotations 2023 dataset. | |
GO Biological Process Annotations 2025 | biological processes involving H2AX gene from the curated GO Biological Process Annotations2025 dataset. | |
GO Cellular Component Annotations 2023 | cellular components containing H2AX protein from the curated GO Cellular Component Annotations 2023 dataset. | |
GO Cellular Component Annotations 2025 | cellular components containing H2AX protein from the curated GO Cellular Component Annotations 2025 dataset. | |
GO Molecular Function Annotations 2023 | molecular functions performed by H2AX gene from the curated GO Molecular Function Annotations 2023 dataset. | |
GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of H2AX gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of H2AX gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures | small molecule perturbations changing expression of H2AX gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset. | |
LINCS L1000 CMAP CRISPR Knockout Consensus Signatures | gene perturbations changing expression of H2AX gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset. | |
MGI Mouse Phenotype Associations 2023 | phenotypes of transgenic mice caused by H2AX gene mutations from the MGI Mouse Phenotype Associations 2023 dataset. | |
MoTrPAC Rat Endurance Exercise Training | tissue samples with high or low expression of H2AX gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset. | |
PFOCR Pathway Figure Associations 2023 | pathways involving H2AX protein from the PFOCR Pathway Figure Associations 2023 dataset. | |
PFOCR Pathway Figure Associations 2024 | pathways involving H2AX protein from the Wikipathways PFOCR 2024 dataset. | |
Reactome Pathways 2024 | pathways involving H2AX protein from the Reactome Pathways 2024 dataset. | |
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of H2AX gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of H2AX gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset. | |
RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of H2AX gene from the RummaGEO Drug Perturbation Signatures dataset. | |
RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of H2AX gene from the RummaGEO Gene Perturbation Signatures dataset. | |
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of H2AX protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of H2AX protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with H2AX protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |
WikiPathways Pathways 2024 | pathways involving H2AX protein from the WikiPathways Pathways 2024 dataset. | |