H2BC12L Gene

Name H2B clustered histone 12 like
Description Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Involved in antimicrobial humoral immune response mediated by antimicrobial peptide and innate immune response in mucosa. Located in cytosol; extracellular space; and nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Histone H2BC12L, a member of the histone H2B family, plays critical roles in maintaining chromatin structure and regulating gene expression. As a core component of the nucleosome, it helps to organize and stabilize DNA packaging; alterations in its sequence or post‐translational modifications (e.g., phosphorylation, acetylation, and formylation) can compromise nucleosome integrity and influence local chromatin accessibility. For instance, cancer‐associated mutations in H2B (such as an E76K substitution) distort the interaction between H2B and H4, resulting in nucleosome instability that contributes to oncogenic transformation and altered cell proliferation dynamics."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Furthermore, dynamic regulation of H2B deposition and turnover has been linked to key cellular processes including transcriptional memory and cell cycle progression. Signal transduction pathways—such as those mediated by protein kinase C theta—can affect H2B deposition on chromatin, thereby modulating the expression of genes involved in rapid transcriptional responses in activated lymphocytes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In addition, fusions of H2B to fluorescent reporters have been exploited to monitor cell cycle speeds in living cells, underscoring its utility as a marker of chromatin dynamics during proliferation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In several cancer settings, aberrant expression of H2B gene family members that are closely related to H2BC12L has been observed. Elevated levels of certain H2B variants (for example, HIST1H2BK) are associated with poor prognosis and have been incorporated into gene signatures that distinguish disease subtypes and predict metastatic behavior in glioma and colorectal cancer."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Moreover, coordinated expression of H2B-related transcripts alongside other tumor suppressor or oncogenic transcripts has been linked to differential outcomes in childhood leukemias, highlighting a potential role in modulating the balance between cell proliferation and apoptosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, H2BC12L contributes to the epigenetic regulation of gene expression through its fundamental role in chromatin organization and nucleosome stability. Its dysregulation—whether through mutation, post-translational modification, or altered expression—can disrupt normal gene regulatory networks, thereby influencing cell cycle progression, differentiation, and tumorigenesis.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yasuhiro Arimura, Masae Ikura, Risa Fujita, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cancer-associated mutations of histones H2B, H3.1 and H2A.Z.1 affect the structure and stability of the nucleosome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gky661"}], "href": "https://doi.org/10.1093/nar/gky661"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30053102"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30053102"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Jasmine Li, Kristine Hardy, Chan Phetsouphanh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nuclear PKC-θ facilitates rapid transcriptional responses in human memory CD4+ T cells through p65 and H2B phosphorylation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.181248"}], "href": "https://doi.org/10.1242/jcs.181248"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27149922"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27149922"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Anna E Eastman, Xinyue Chen, Xiao Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Resolving Cell Cycle Speed in One Snapshot with a Live-Cell Fluorescent Reporter."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2020.107804"}], "href": "https://doi.org/10.1016/j.celrep.2020.107804"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32579930"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32579930"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Weidong Liu, Zhentao Xu, Jie Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "High Levels of HIST1H2BK in Low-Grade Glioma Predicts Poor Prognosis: A Study Using CGGA and TCGA Data."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Oncol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fonc.2020.00627"}], "href": "https://doi.org/10.3389/fonc.2020.00627"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32457836"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32457836"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Jin C Kim, Ye J Ha, In J Park, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Tumor immune microenvironment of primary colorectal adenocarcinomas metastasizing to the liver or lungs."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Surg Oncol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jso.26631"}], "href": "https://doi.org/10.1002/jso.26631"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34351649"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34351649"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "J Qiu, P Gunaratne, L E Peterson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel potential ALL low-risk markers revealed by gene expression profiling with new high-throughput SSH-CCS-PCR."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Leukemia (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/sj.leu.2403073"}], "href": "https://doi.org/10.1038/sj.leu.2403073"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12970791"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12970791"}]}]}]}
NCBI Gene ID 54145
API
Download Associations
Predicted Functions View H2BC12L's ARCHS4 Predicted Functions.
Co-expressed Genes View H2BC12L's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View H2BC12L's ARCHS4 Predicted Functions.

Functional Associations

H2BC12L has 981 functional associations with biological entities spanning 4 categories (functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.

Click the + buttons to view associations for H2BC12L from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of H2BC12L gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing H2BC12L protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with H2BC12L protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
GO Biological Process Annotations 2025 biological processes involving H2BC12L gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2025 cellular components containing H2BC12L protein from the curated GO Cellular Component Annotations 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of H2BC12L gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of H2BC12L gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
KEGG Pathways 2026 pathways involving H2BC12L protein from the KEGG Pathways 2026 dataset.
Reactome Pathways 2024 pathways involving H2BC12L protein from the Reactome Pathways 2024 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of H2BC12L gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of H2BC12L gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with H2BC12L protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2024 pathways involving H2BC12L protein from the WikiPathways Pathways 2024 dataset.