| Name | H2B clustered histone 13 |
| Description | Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H2B family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. This gene is found in the small histone gene cluster on chromosome 6p22-p21.3. [provided by RefSeq, Aug 2015] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Histone H2B variants – including the replication‐dependent H2BC13 – are emerging as key modulators of chromatin architecture and gene expression. Several studies have demonstrated that fluctuations in the expression of H2B family members are intimately linked to changes in nucleosome stability, transcriptional regulation, and DNA repair processes. For instance, altered expression of H2B subtypes has been observed during carcinogenesis, where aberrant levels correlate with differences in tumor stage, genomic instability, and patient prognosis (1,2,4). In lung cancer models, the downregulation of select histone H2B variants through targeted silencing of enzymes such as poly(ADP‐ribose) glycohydrolase has been associated with reduced BaP‐induced carcinogenesis and appears to impact pathways governing genome stability (1). Similarly, in cervical cancer, a dysregulated pattern of histone cluster expression—including H2B variants—is linked to the cellular response to DNA damage and may provide prognostic information (2). Moreover, efforts to define novel histone haplotypes have underscored the complexity and specialization within the H2B family, with H2BC13 representing one example of a variant that may be differentially utilized in establishing a specific chromatin environment (3). Collectively, these findings support a role for H2BC13 not only in structuring chromatin and maintaining genomic integrity, but also in orchestrating the dynamic transcriptional responses that underlie cell differentiation, stress adaptation, and oncogenic transformation."}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Zhuoying Zeng, Jingjing Lu, Desheng Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Poly(ADP-ribose) glycohydrolase silencing-mediated H2B expression inhibits benzo(a)pyrene-induced carcinogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Environ Toxicol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/tox.23034"}], "href": "https://doi.org/10.1002/tox.23034"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33044785"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33044785"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Xiaofang Li, Run Tian, Hugh Gao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of a histone family gene signature for predicting the prognosis of cervical cancer patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-017-16472-5"}], "href": "https://doi.org/10.1038/s41598-017-16472-5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29184082"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29184082"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Kozo Ohkusu-Tsukada, Daiki Ito, Yuki Okuno, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Signs of atopic dermatitis and contact dermatitis affected by distinct H2-haplotype in the NC/Nga genetic background."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-018-21049-x"}], "href": "https://doi.org/10.1038/s41598-018-21049-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29416104"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29416104"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Muhammad A Shah, Emily L Denton, Cheryl H Arrowsmith, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A global assessment of cancer genomic alterations in epigenetic mechanisms."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Epigenetics Chromatin (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1756-8935-7-29"}], "href": "https://doi.org/10.1186/1756-8935-7-29"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25484917"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25484917"}]}]}]}
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| NCBI Gene ID | 8340 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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H2BC13 has 1,944 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 20 datasets.
Click the + buttons to view associations for H2BC13 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of H2BC13 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing H2BC13 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with H2BC13 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores 2025 | diseases associated with H2BC13 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with H2BC13 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving H2BC13 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing H2BC13 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of H2BC13 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with H2BC13 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of H2BC13 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of H2BC13 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| KEGG Pathways 2026 | pathways involving H2BC13 protein from the KEGG Pathways 2026 dataset. | |
| LINCS L1000 CMAP Chemical Perturbation Consensus Signatures | small molecule perturbations changing expression of H2BC13 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset. | |
| Reactome Pathways 2024 | pathways involving H2BC13 protein from the Reactome Pathways 2024 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of H2BC13 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of H2BC13 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of H2BC13 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of H2BC13 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with H2BC13 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |
| WikiPathways Pathways 2024 | pathways involving H2BC13 protein from the WikiPathways Pathways 2024 dataset. | |