H2BC18 Gene

Name H2B clustered histone 18
Description Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. This structure consists of approximately 146 bp of DNA wrapped around a nucleosome, an octamer composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin fiber is further compacted through the interaction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures. This gene encodes a replication-dependent histone that is a member of the histone H2B family and is found in a histone cluster on chromosome 1. [provided by RefSeq, Aug 2015]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n H2BC18 is a replication‐dependent histone H2B family member that plays a central role in organizing DNA into nucleosomes and thereby governs chromatin structure, gene transcription, and genomic stability. Dysregulation of H2B family members—including altered expression, epigenetic modifications, and changes in mRNA processing—has been repeatedly linked to various pathological states. For instance, studies in prostate and lung cancers have demonstrated that aberrant DNA methylation and upregulation of clustered H2B genes correlate with tumor progression and poor patient prognosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In colorectal carcinoma, increased expression of certain H2B variants reinforces cancer stem cell features and enhances malignant potential through the activation of signaling pathways such as Notch."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Similarly, modulation of H2B family proteins has been implicated in the response to novel targeted therapies in aggressive cancers"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ", and variations in the expression of these genes have also been observed in proteomic profiling studies distinguishing phenotypes in model organisms."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Moreover, research on histone gene processing revealed that under certain conditions replication-dependent H2B genes can produce alternatively polyadenylated transcripts that are actively translated, suggesting regulation at both the epigenetic and post-transcriptional levels."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Finally, incomplete reprogramming of histone clusters, as observed in somatic cell nuclear transfer embryos, reinforces the importance of proper H2B gene regulation for developmental and cellular fidelity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings underscore that H2BC18 and its related H2B family members are not only structural components vital for nucleosome formation but also serve as dynamic regulators of gene expression. Their alterations in diverse disease models highlight potential roles as biomarkers and therapeutic targets, warranting further investigation into their mechanistic contributions to oncogenesis, developmental reprogramming, and chromatin remodeling.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Gunter Weiss, Susan Cottrell, Jürgen Distler, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DNA methylation of the PITX2 gene promoter region is a strong independent prognostic marker of biochemical recurrence in patients with prostate cancer after radical prostatectomy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Urol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.juro.2008.11.120"}], "href": "https://doi.org/10.1016/j.juro.2008.11.120"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19233404"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19233404"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Zhuoying Zeng, Jingjing Lu, Desheng Wu, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Therapeutic impact of BET inhibitor BI 894999 treatment: backtranslation from the clinic."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Br J Cancer (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41416-022-01815-5"}], "href": "https://doi.org/10.1038/s41416-022-01815-5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35444289"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35444289"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Samuele Bovo, Alessio Di Luca, Giuliano Galimberti, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A comparative analysis of label-free liquid chromatography-mass spectrometry liver proteomic profiles highlights metabolic differences between pig breeds."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0199649"}], "href": "https://doi.org/10.1371/journal.pone.0199649"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30208024"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30208024"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Vijayalakshmi Kari, Oleksandra Karpiuk, Bettina Tieg, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A subset of histone H2B genes produces polyadenylated mRNAs under a variety of cellular conditions."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0063745"}], "href": "https://doi.org/10.1371/journal.pone.0063745"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23717473"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23717473"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Byungkuk Min, Sunwha Cho, Jung Sun Park, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The HIST1 Locus Escapes Reprogramming in Cloned Bovine Embryos."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "G3 (Bethesda) (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1534/g3.115.026666"}], "href": "https://doi.org/10.1534/g3.115.026666"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26976441"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26976441"}]}]}]}
NCBI Gene ID 440689
API
Download Associations
Predicted Functions View H2BC18's ARCHS4 Predicted Functions.
Co-expressed Genes View H2BC18's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View H2BC18's ARCHS4 Predicted Functions.

Functional Associations

H2BC18 has 1,635 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 19 datasets.

Click the + buttons to view associations for H2BC18 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of H2BC18 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of H2BC18 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing H2BC18 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with H2BC18 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with H2BC18 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Cellular Component Annotations 2025 cellular components containing H2BC18 protein from the curated GO Cellular Component Annotations 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of H2BC18 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of H2BC18 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of H2BC18 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of H2BC18 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
KEGG Pathways 2026 pathways involving H2BC18 protein from the KEGG Pathways 2026 dataset.
Reactome Pathways 2024 pathways involving H2BC18 protein from the Reactome Pathways 2024 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of H2BC18 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of H2BC18 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of H2BC18 gene from the RummaGEO Gene Perturbation Signatures dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of H2BC18 gene from the Sci-Plex Drug Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of H2BC18 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of H2BC18 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with H2BC18 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.