H2BW1 Gene

Name H2B.W histone 1
Description Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene encodes a replication-independent histone that is a member of the H2B histone family that is specifically expressed in sperm nuclei. A polymorphism in the 5' UTR of this gene is associated with male infertility.[provided by RefSeq, Oct 2015]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n H2BFWT is a testis‐specific variant of histone H2B that becomes incorporated into sperm chromatin and plays a crucial role during spermatogenesis. It participates in the reorganization and remodeling of chromatin in the male germline, thereby contributing to the proper packaging and epigenetic regulation of the paternal genome. Genetic studies have demonstrated that single nucleotide polymorphisms in H2BFWT (notably the –9C>T and 368A>G variants) are associated with reduced translational efficiency, lower protein expression, impaired sperm parameters, and an increased risk of idiopathic infertility ["}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "]. Moreover, environmental factors such as tobacco smoke can downregulate H2BFWT mRNA expression, which is linked to compromised sperm quality and increased DNA damage ["}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "]. Biochemical analyses have revealed that while H2BFWT can substitute for conventional H2B within the nucleosome without altering the overall nucleosome structure or stability, its highly divergent N-terminal tail fails to recruit chromosome condensation factors, suggesting a role as a specific epigenetic marker in sperm chromatin ["}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "]. Collectively, these findings underscore the dual structural and regulatory roles of H2BFWT in chromatin remodeling during spermiogenesis and its impact on male fertility.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jinu Lee, Hee Suk Park, Hwan Hee Kim, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Functional polymorphism in H2BFWT-5'UTR is associated with susceptibility to male infertility."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/j.1582-4934.2009.00830.x"}], "href": "https://doi.org/10.1111/j.1582-4934.2009.00830.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19583817"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19583817"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "A Rafatmanesh, H Nikzad, A Ebrahimi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association of the c.-9C>T and c.368A>G transitions in H2BFWT gene with male infertility in an Iranian population."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Andrologia (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/and.12805"}], "href": "https://doi.org/10.1111/and.12805"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28370107"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28370107"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Hou-qun Ying, Matthew B Scott, A Zhou-Cun "}, {"type": "b", "children": [{"type": "t", "text": "Relationship of SNP of H2BFWT gene to male infertility in a Chinese population with idiopathic spermatogenesis impairment."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomarkers (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3109/1354750X.2012.677066"}], "href": "https://doi.org/10.3109/1354750X.2012.677066"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22509975"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22509975"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "M Teimouri, H Najaran, A Hosseinzadeh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association between two common transitions of H2BFWT gene and male infertility: a case-control, meta, and structural analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Andrology (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/andr.12464"}], "href": "https://doi.org/10.1111/andr.12464"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29453813"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29453813"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Tianjun Li, Xianping Ding, Lin Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "[Association of single nucleotide polymorphisms in H2BFWT with male infertility in southwest China]."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Zhonghua Yi Xue Yi Chuan Xue Za Zhi (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3760/cma.j.issn.1003-9406.2014.01.016"}], "href": "https://doi.org/10.3760/cma.j.issn.1003-9406.2014.01.016"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24510567"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24510567"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Houda Amor, Ali Zeyad, Mohamad Eid Hammadeh "}, {"type": "b", "children": [{"type": "t", "text": "Tobacco smoking and its impact on the expression level of sperm nuclear protein genes: H2BFWT, TNP1, TNP2, PRM1 and PRM2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Andrologia (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/and.13964"}], "href": "https://doi.org/10.1111/and.13964"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33440036"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33440036"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Mathieu Boulard, Thierry Gautier, Gaelh Ouengue Mbele, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The NH2 tail of the novel histone variant H2BFWT exhibits properties distinct from conventional H2B with respect to the assembly of mitotic chromosomes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.26.4.1518-1526.2006"}], "href": "https://doi.org/10.1128/MCB.26.4.1518-1526.2006"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16449661"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16449661"}]}]}]}
NCBI Gene ID 158983
API
Download Associations
Predicted Functions View H2BW1's ARCHS4 Predicted Functions.
Co-expressed Genes View H2BW1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View H2BW1's ARCHS4 Predicted Functions.

Functional Associations

H2BW1 has 1,612 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 19 datasets.

Click the + buttons to view associations for H2BW1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of H2BW1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of H2BW1 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing H2BW1 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with H2BW1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with H2BW1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2025 biological processes involving H2BW1 gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2025 cellular components containing H2BW1 protein from the curated GO Cellular Component Annotations 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of H2BW1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of H2BW1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of H2BW1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
KEGG Pathways 2026 pathways involving H2BW1 protein from the KEGG Pathways 2026 dataset.
PFOCR Pathway Figure Associations 2024 pathways involving H2BW1 protein from the Wikipathways PFOCR 2024 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of H2BW1 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of H2BW1 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of H2BW1 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of H2BW1 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of H2BW1 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with H2BW1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2024 pathways involving H2BW1 protein from the WikiPathways Pathways 2024 dataset.