| Name | H3 clustered histone 13 |
| Description | Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H3 family. [provided by RefSeq, Aug 2015] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Histone H3C13—one member of the canonical histone H3 family (e.g. encoded by genes such as HIST2H3C)—is emerging as a critical regulator of chromatin structure and function. Its incorporation into nucleosomes is central to the maintenance of genomic integrity, as it participates in DNA packaging during replication, repair, and differentiation. Post‐translational modifications (PTMs) of H3—including site‐specific acetylation (such as H3K56ac) that facilitates chromatin assembly following DNA damage and replication—underpin its role in coupling DNA synthesis with epigenetic control, with aberrant levels noted in cancer cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Furthermore, mutations affecting key residues in histone H3—including a novel K27M substitution in HIST2H3C—have been directly linked to aggressive pediatric tumors like diffuse intrinsic pontine glioma; such alterations perturb normal H3K27-trimethylation and thereby drive distinct oncogenic programs."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In parallel, proteolytic events and other PTMs of H3 modulate its functions during cellular differentiation and stress responses"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ", while its dynamic deposition is mediated by a suite of histone chaperones and chromatin-remodeling factors that ensure proper nucleosome assembly and epigenome maintenance."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Collectively, these studies underscore that H3C13 functions not only as a structural component of chromatin but also as an integrator of diverse regulatory signals—through its PTMs and variant-specific dynamics—that modulate gene expression, cell cycle progression, and ultimately, cellular homeostasis and disease.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Chandrima Das, M Scott Lucia, Kirk C Hansen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CBP/p300-mediated acetylation of histone H3 on lysine 56."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature07861"}], "href": "https://doi.org/10.1038/nature07861"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19270680"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19270680"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "David Castel, Cathy Philippe, Raphaël Calmon, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Histone H3F3A and HIST1H3B K27M mutations define two subgroups of diffuse intrinsic pontine gliomas with different prognosis and phenotypes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Acta Neuropathol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00401-015-1478-0"}], "href": "https://doi.org/10.1007/s00401-015-1478-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26399631"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26399631"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Elizabeth M Duncan, Tara L Muratore-Schroeder, Richard G Cook, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cathepsin L proteolytically processes histone H3 during mouse embryonic stem cell differentiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2008.09.055"}], "href": "https://doi.org/10.1016/j.cell.2008.09.055"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18957203"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18957203"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Hongda Huang, Caroline B Strømme, Giulia Saredi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A unique binding mode enables MCM2 to chaperone histones H3-H4 at replication forks."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Struct Mol Biol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nsmb.3055"}], "href": "https://doi.org/10.1038/nsmb.3055"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26167883"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26167883"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Nikolay A Pchelintsev, Tony McBryan, Taranjit Singh Rai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Placing the HIRA histone chaperone complex in the chromatin landscape."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2013.03.026"}], "href": "https://doi.org/10.1016/j.celrep.2013.03.026"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23602572"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23602572"}]}]}]}
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| NCBI Gene ID | 653604 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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H3C13 has 6,007 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.
Click the + buttons to view associations for H3C13 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of H3C13 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing H3C13 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with H3C13 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with H3C13 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving H3C13 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing H3C13 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of H3C13 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of H3C13 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of H3C13 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| KEGG Pathways 2026 | pathways involving H3C13 protein from the KEGG Pathways 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of H3C13 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of H3C13 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of H3C13 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of H3C13 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with H3C13 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |
| WikiPathways Pathways 2024 | pathways involving H3C13 protein from the WikiPathways Pathways 2024 dataset. | |