| Name | H3 clustered histone 6 |
| Description | Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H3 family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. This gene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Aug 2015] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Histone H3 variants—including those encoded by genes in the H3 family such as H3C6—are central to the dynamics of chromatin structure and function. In multiple studies these histones have been shown to serve as both architectural components of the nucleosome and as substrates for diverse post‐translational modifications that regulate gene expression, DNA repair, and chromosome segregation. Mutations targeting key residues (for example, lysine‐to‐methionine changes at position 27) in H3 variants can dominantly inhibit the activity of histone methyltransferase complexes (such as PRC2, via its EZH2 subunit), thereby markedly reducing repressive marks like H3K27me3. This in turn alters epigenetic states with profound consequences for cell‐fate determination and tumorigenesis in pediatric brain tumors."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In parallel, the proper deposition of these histone H3 variants into chromatin is ensured by dedicated histone chaperones. Proteins such as DAXX, ATRX, and HIRA mediate the replication‐independent assembly of H3.3–H4 complexes on DNA, safeguarding chromatin integrity while contributing to the fine tuning of transcriptional programs and heterochromatin formation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In specialized contexts like centromeres, a related pathway mediates the deposition of the H3 variant CENP-A via a chaperone‐dependent process (exclusively employing HJURP) to establish a platform for kinetochore assembly and faithful chromosome segregation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, different H3 variants and their specific point mutations appear to drive distinct oncogenic transcriptional programs. For example, variant‐specific mutations (such as those at glycine 34 or lysine 27) have been found to occur in a highly tumor‐ and tissue‐restricted manner, suggesting that even small structural differences among the H3 family members (including H3C6) can have discrete functional outcomes that influence cancer phenotype and patient prognosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, these findings underscore that histone H3 variants such as H3C6 play multifaceted roles by serving as structural units for chromatin as well as dynamic regulators of epigenetic modifications, with their mutation or misregulation contributing to developmental abnormalities and tumorigenesis.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Peter W Lewis, Manuel M Müller, Matthew S Koletsky, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Inhibition of PRC2 activity by a gain-of-function H3 mutation found in pediatric glioblastoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Science (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/science.1232245"}], "href": "https://doi.org/10.1126/science.1232245"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23539183"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23539183"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Pascal Drané, Khalid Ouararhni, Arnaud Depaux, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The death-associated protein DAXX is a novel histone chaperone involved in the replication-independent deposition of H3.3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Dev (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/gad.566910"}], "href": "https://doi.org/10.1101/gad.566910"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20504901"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20504901"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Daniel R Foltz, Lars E T Jansen, Aaron O Bailey, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Centromere-specific assembly of CENP-a nucleosomes is mediated by HJURP."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2009.02.039"}], "href": "https://doi.org/10.1016/j.cell.2009.02.039"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19410544"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19410544"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Sam Behjati, Patrick S Tarpey, Nadège Presneau, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Distinct H3F3A and H3F3B driver mutations define chondroblastoma and giant cell tumor of bone."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ng.2814"}], "href": "https://doi.org/10.1038/ng.2814"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24162739"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24162739"}]}]}]}
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| NCBI Gene ID | 8353 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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H3C6 has 610 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.
Click the + buttons to view associations for H3C6 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of H3C6 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of H3C6 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores 2025 | diseases associated with H3C6 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with H3C6 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of H3C6 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of H3C6 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of H3C6 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| WikiPathways Pathways 2024 | pathways involving H3C6 protein from the WikiPathways Pathways 2024 dataset. | |