H3C7 Gene

Name H3 clustered histone 7
Description Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. This structure consists of approximately 146 bp of DNA wrapped around a nucleosome, an octamer composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin fiber is further compacted through the interaction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H3 family. Transcripts from this gene lack polyA tails; instead, they contain a palindromic termination element. This gene is found in the large histone gene cluster on chromosome 6p22-p21.3. [provided by RefSeq, Aug 2015]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Histone H3 variants, including those encoded by the canonical gene cluster (such as HIST1H3C) and the replication‐independent variant H3.3, are key components of nucleosomal chromatin that regulate gene expression, genome stability, and cell identity. In normal cells, these histones act as structural platforms for epigenetic modifications that govern chromatin accessibility and transcription. For example, they are deposited through dedicated chaperone systems – with H3.3 being loaded by the DAXX/ATRX complex and CENP‑A (a specialized H3 variant at centromeres) assembled via HJURP – thus ensuring proper chromatin configuration during transcription, replication, and DNA repair (4,5,12,26)."}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In the setting of pediatric high‐grade gliomas and diffuse intrinsic pontine gliomas (DIPG), somatic missense mutations—most notably at lysine 27 (K27M) and glycine 34—have been identified in both H3.3 (H3F3A/H3F3B) and canonical H3 genes (including those in the HIST1H3 cluster, of which HIST1H3C is a member) (1,2,6,7,16,36). These mutations disturb the normal pattern of post‐translational modifications such as H3K27 trimethylation, triggering a global epigenetic reprogramming that defines distinct molecular subgroups and is tightly linked to aggressive tumor behavior and poor clinical outcome (1,6,16,36)."}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond their role in pediatric gliomagenesis, histone H3 variants are also implicated in other oncogenic processes through their influence on transcriptional elongation, chromatin assembly, and even alternative RNA splicing, thereby contributing to tumor cell growth and metastasis (13,14,21,23). Alterations in the methylation state of histone H3 genes, including aberrant promoter methylation of HIST1H3C, may serve not only as critical effectors of oncogenic transformation but also as prognostic biomarkers for risk stratification in tumors such as neuroblastoma (39).\n\n "}, {"type": "rg", "children": []}]}]}
NCBI Gene ID 8968
API
Download Associations
Predicted Functions View H3C7's ARCHS4 Predicted Functions.
Co-expressed Genes View H3C7's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View H3C7's ARCHS4 Predicted Functions.

Functional Associations

H3C7 has 5,409 functional associations with biological entities spanning 6 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 24 datasets.

Click the + buttons to view associations for H3C7 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of H3C7 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of H3C7 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of H3C7 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing H3C7 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 cellular components containing H3C7 protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with H3C7 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with H3C7 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with H3C7 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2025 biological processes involving H3C7 gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2025 cellular components containing H3C7 protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by H3C7 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of H3C7 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of H3C7 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with H3C7 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of H3C7 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of H3C7 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
KEGG Pathways 2026 pathways involving H3C7 protein from the KEGG Pathways 2026 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of H3C7 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of H3C7 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of H3C7 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of H3C7 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of H3C7 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with H3C7 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2024 pathways involving H3C7 protein from the WikiPathways Pathways 2024 dataset.