H3Y2 Gene

Name H3.Y histone 2
Description Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Located in nucleoplasm. Part of nucleosome. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe transcription factor DUX4 transiently induces the expression of specific histone variants—H3.X and H3.Y (hereafter H3Y2 refers to the H3.Y variant)—in myoblasts. H3Y2 is rapidly incorporated throughout the gene bodies of DUX4-induced target genes after a brief DUX4 pulse. Its presence in chromatin appears to maintain an open and active configuration, thereby prolonging gene activity and enhancing the ability to rapidly re‐activate these genes upon subsequent DUX4 signaling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn essence, H3Y2 functions as an epigenetic modifier that creates a “memory” of transient transcription factor activity. By stabilizing the active state of DUX4 target genes, H3Y2 facilitates sustained gene expression even after the initial activating signal has faded, suggesting a mechanism by which brief developmental or pathological cues can lead to prolonged transcriptional responses."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Rebecca Resnick, Chao-Jen Wong, Danielle C Hamm, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DUX4-Induced Histone Variants H3.X and H3.Y Mark DUX4 Target Genes for Expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2019.10.025"}], "href": "https://doi.org/10.1016/j.celrep.2019.10.025"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31722199"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31722199"}]}]}]}
NCBI Gene ID 340096
API
Download Associations
Predicted Functions View H3Y2's ARCHS4 Predicted Functions.
Co-expressed Genes View H3Y2's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View H3Y2's ARCHS4 Predicted Functions.

Functional Associations

H3Y2 has 196 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 12 datasets.

Click the + buttons to view associations for H3Y2 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of H3Y2 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of H3Y2 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with H3Y2 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with H3Y2 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Cellular Component Annotations 2025 cellular components containing H3Y2 protein from the curated GO Cellular Component Annotations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of H3Y2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of H3Y2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
KEGG Pathways 2026 pathways involving H3Y2 protein from the KEGG Pathways 2026 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of H3Y2 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of H3Y2 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of H3Y2 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with H3Y2 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.