| Name | H4 clustered histone 11 |
| Description | Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H4 family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. This gene is found in the small histone gene cluster on chromosome 6p22-p21.3. [provided by RefSeq, Aug 2015] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n A unifying theme emerging from these studies is that specific post‐translational modifications of histone H4—here “H4C11” serving as a representative entity for the H4 molecule and its modified forms—play central roles in modulating chromatin structure and function. In particular, acetylation of H4 at lysine 16 (H4K16Ac) has been shown to impede the formation of condensed chromatin fibers and to restrict the activity of chromatin remodeling enzymes, thereby influencing transcriptional activity and DNA repair processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In parallel, methylation of H4 at lysine 20 (e.g. H4K20me2) provides a docking site for key DNA repair factors such as 53BP1, ensuring the proper recruitment of repair machinery at double-strand breaks."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Enzymes that remove or interpret these marks are equally critical. For instance, the NAD⁺-dependent deacetylase SIRT2 preferentially targets H4K16Ac during the G2/M phase, a modification that is thought to facilitate chromatin condensation necessary for mitosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " In addition, bromodomain-containing effectors such as Brd4 exhibit selective binding to di- or tetraacetylated H4 tails, thereby “reading” the histone code and linking histone acetylation to transcriptional regulation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Even more striking, a single bromodomain module has been demonstrated to engage two acetylated lysine residues simultaneously, illustrating a combinatorial mechanism of histone code interpretation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Furthermore, acetylation and other covalent modifications of H4 contribute to the dynamic recruitment of chromatin modifiers that regulate DNA repair and gene expression. For example, Tip60-dependent acetylation events have been implicated in displacing repair factors from repressive marks, thereby calibrating the balance between homologous recombination and nonhomologous end joining."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Similarly, deacetylase activities (as mediated by SIRT1) and histone methyltransferases/demethylases (including those modulating H4K20 methylation) integrate metabolic and mitogenic signals to influence chromatin accessibility, gene transcription, and genome integrity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings underscore that the H4 molecule, here typified by “H4C11,” functions as a dynamic platform whose acetylation and methylation states are central determinants of higher‐order chromatin organization, transcriptional responsiveness, efficient DNA repair, and ultimately cellular fate decisions in diverse physiological and pathological contexts."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "8"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Michael Shogren-Knaak, Haruhiko Ishii, Jian-Min Sun, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Histone H4-K16 acetylation controls chromatin structure and protein interactions."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Science (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/science.1124000"}], "href": "https://doi.org/10.1126/science.1124000"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16469925"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16469925"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Maria Victoria Botuyan, Joseph Lee, Irene M Ward, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2006.10.043"}], "href": "https://doi.org/10.1016/j.cell.2006.10.043"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17190600"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17190600"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Alejandro Vaquero, Michael B Scher, Dong Hoon Lee, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SirT2 is a histone deacetylase with preference for histone H4 Lys 16 during mitosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Dev (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/gad.1412706"}], "href": "https://doi.org/10.1101/gad.1412706"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16648462"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16648462"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Anup Dey, Farideh Chitsaz, Asim Abbasi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The double bromodomain protein Brd4 binds to acetylated chromatin during interphase and mitosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1433065100"}], "href": "https://doi.org/10.1073/pnas.1433065100"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12840145"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12840145"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Jeanne Morinière, Sophie Rousseaux, Ulrich Steuerwald, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cooperative binding of two acetylation marks on a histone tail by a single bromodomain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature08397"}], "href": "https://doi.org/10.1038/nature08397"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19794495"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19794495"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Jiangbo Tang, Nam Woo Cho, Gaofeng Cui, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Acetylation limits 53BP1 association with damaged chromatin to promote homologous recombination."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Struct Mol Biol (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nsmb.2499"}], "href": "https://doi.org/10.1038/nsmb.2499"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23377543"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23377543"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Alejandro Vaquero, Michael Scher, Hediye Erdjument-Bromage, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SIRT1 regulates the histone methyl-transferase SUV39H1 during heterochromatin formation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature06268"}], "href": "https://doi.org/10.1038/nature06268"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18004385"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18004385"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Wen Liu, Bogdan Tanasa, Oksana V Tyurina, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PHF8 mediates histone H4 lysine 20 demethylation events involved in cell cycle progression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature09272"}], "href": "https://doi.org/10.1038/nature09272"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20622854"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20622854"}]}]}]}
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| NCBI Gene ID | 8363 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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H4C11 has 623 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.
Click the + buttons to view associations for H4C11 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of H4C11 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of H4C11 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores 2025 | diseases associated with H4C11 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with H4C11 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of H4C11 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of H4C11 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| WikiPathways Pathways 2024 | pathways involving H4C11 protein from the WikiPathways Pathways 2024 dataset. | |