| Name | H4 clustered histone 12 |
| Description | Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H4 family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. This gene is found in the small histone gene cluster on chromosome 6p22-p21.3. [provided by RefSeq, Aug 2015] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n A growing body of evidence demonstrates that specific post‐translational modifications on the histone H4 tail play central roles in modulating chromatin architecture, DNA repair, transcription regulation, and cell cycle progression. For instance, acetylation of H4 at lysine 16 (H4‐K16Ac) is well documented to impede the formation of compact chromatin fibers and reduce interactions between nucleosomal arrays, thereby facilitating a more open, transcriptionally active chromatin state and affecting the activity of chromatin remodelers."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In parallel, the methylation status of H4 lysine 20 is critical for DNA repair; recognition of H4 dimethylated at lysine 20 (H4‐K20me2) by tandem Tudor domains of repair factors such as 53BP1 ensures proper targeting of these proteins to double‐strand breaks."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " The dynamic balance of these modifications is further controlled by specific enzymes: for example, the NAD⁺‐dependent deacetylase SirT2 selectively targets H4‐K16Ac at the G2/M transition to promote chromatin condensation, demonstrating a key mitotic function"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ", while TIP60‐dependent acetylation of H4 can modulate the competitive binding of repair versus recombination factors at sites of damage."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In addition to these regulatory events, the structural incorporation of histone H4 into specialized nucleosomal complexes is essential for epigenetic identity; for example, CENP‐A/H4 heterotetramers confer a unique rigidity to centromeric nucleosomes that is crucial for centromere specification and stability."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " In Drosophila and mammalian systems, acetylation of H4 by enzymes such as MOF and its subsequent recognition by bromodomain‐containing proteins (e.g. Brdt) underlie key events in dosage compensation and transcriptional activation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " Moreover, shifts in cellular metabolism during stem cell activation can alter the acetylation status of H4—specifically H4‐K16Ac—via modulation of NAD⁺‐dependent deacetylase activities such as that of SIRT1, thereby linking metabolic state to epigenetic control."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": " Finally, the demethylase activity of PHF8 on H4‐K20me1 further underscores how removal of repressive marks contributes to cell cycle progression and gene activation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": " Together, these studies reveal that the diverse modifications found on the H4 tail (often assayed using reagents such as H4C12) serve as dynamic signals that integrate chromatin structure with fundamental cellular processes.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Michael Shogren-Knaak, Haruhiko Ishii, Jian-Min Sun, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Histone H4-K16 acetylation controls chromatin structure and protein interactions."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Science (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/science.1124000"}], "href": "https://doi.org/10.1126/science.1124000"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16469925"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16469925"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Maria Victoria Botuyan, Joseph Lee, Irene M Ward, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2006.10.043"}], "href": "https://doi.org/10.1016/j.cell.2006.10.043"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17190600"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17190600"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Alejandro Vaquero, Michael B Scher, Dong Hoon Lee, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SirT2 is a histone deacetylase with preference for histone H4 Lys 16 during mitosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Dev (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/gad.1412706"}], "href": "https://doi.org/10.1101/gad.1412706"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16648462"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16648462"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Jiangbo Tang, Nam Woo Cho, Gaofeng Cui, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Acetylation limits 53BP1 association with damaged chromatin to promote homologous recombination."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Struct Mol Biol (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nsmb.2499"}], "href": "https://doi.org/10.1038/nsmb.2499"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23377543"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23377543"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Lars E T Jansen, Ben E Black, Daniel R Foltz, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2006.02.007"}], "href": "https://doi.org/10.1016/j.molcel.2006.02.007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16543150"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16543150"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Jeanne Morinière, Sophie Rousseaux, Ulrich Steuerwald, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cooperative binding of two acetylation marks on a histone tail by a single bromodomain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature08397"}], "href": "https://doi.org/10.1038/nature08397"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19794495"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19794495"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "James G Ryall, Stefania Dell'Orso, Assia Derfoul, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The NAD(+)-dependent SIRT1 deacetylase translates a metabolic switch into regulatory epigenetics in skeletal muscle stem cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Stem Cell (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.stem.2014.12.004"}], "href": "https://doi.org/10.1016/j.stem.2014.12.004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25600643"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25600643"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Wen Liu, Bogdan Tanasa, Oksana V Tyurina, et al. 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| NCBI Gene ID | 8362 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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H4C12 has 971 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.
Click the + buttons to view associations for H4C12 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of H4C12 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of H4C12 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores 2025 | diseases associated with H4C12 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with H4C12 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of H4C12 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of H4C12 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| WikiPathways Pathways 2024 | pathways involving H4C12 protein from the WikiPathways Pathways 2024 dataset. | |