| Name | H4 clustered histone 13 |
| Description | Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H4 family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. This gene is found in the small histone gene cluster on chromosome 6p22-p21.3. [provided by RefSeq, Aug 2015] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Histone H4 modifications are central to regulating chromatin structure, gene expression, and genome stability. For example, acetylation at lysine 16 on histone H4 (H4K16Ac) impedes the formation of compact 30‐nm-like fibers and limits inter‐nucleosomal interactions, thereby facilitating a more open chromatin state that is accessible to remodeling enzymes and factors critical for transcription and DNA repair."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Dynamic regulation of H4K16Ac is achieved through the opposing activities of histone acetyltransferases and deacetylases. In particular, SIRT2 selectively deacetylates H4K16Ac during the G2/M transition, a modification essential for the chromatin condensation needed during mitosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Moreover, signaling pathways such as those initiated by physiologic levels of vitamin D can induce H4 acetylation at gene promoters (for example, of the MKP-1 gene), thereby dampening inflammatory responses in monocytes/macrophages."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Besides acetylation, methylation of histone H4—most notably on lysine 20 (H4K20)—plays an essential role in genome maintenance. The dimethylated form (H4K20me2) is specifically recognized by repair proteins such as 53BP1 via tandem Tudor domains, a recognition event that is crucial for the recruitment of repair factors to double-strand breaks."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In addition, demethylation of H4K20me1 by enzymes like PHF8 alleviates repressive chromatin marks to promote appropriate cell cycle progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Chromatin “readers” further interpret combinatorial H4 modifications. Bromodomain proteins, such as Brd4, specifically bind to di- and tetraacetylated H4 tails, which is critical for their role in recruiting transcriptional elongation complexes and propagating active chromatin states."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " Moreover, in the context of centromere identity, H4 forms a tight, rigid complex with the centromere-specific histone variant CENP-A—structurally optimizing centromeric nucleosomes to ensure accurate kinetochore assembly and faithful chromosome segregation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "9", "end_ref": "11"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In the DNA damage response, coordinated H4 modifications are also key. For instance, the acetyltransferase TIP60 is activated upon binding to specific histone marks and acetylates histone H4, thereby facilitating the recruitment and assembly of repair complexes at double-strand breaks."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": " Similarly, the MOF-containing MSL complex acetylates H4K16, linking metabolic signals to chromatin remodeling necessary for normal developmental processes and repair."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these studies demonstrate that post‐translational modifications of histone H4 not only govern higher order chromatin structure but also orchestrate critical processes such as transcriptional control, DNA repair, and centromere function. The diverse and dynamic “histone code” written on H4 thereby functions as a master regulator of cellular homeostasis and genome integrity."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "14", "end_ref": "26"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Michael Shogren-Knaak, Haruhiko Ishii, Jian-Min Sun, et al. 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| NCBI Gene ID | 8368 |
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| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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H4C13 has 569 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.
Click the + buttons to view associations for H4C13 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of H4C13 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of H4C13 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores 2025 | diseases associated with H4C13 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with H4C13 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of H4C13 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of H4C13 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| WikiPathways Pathways 2024 | pathways involving H4C13 protein from the WikiPathways Pathways 2024 dataset. | |