H4C2 Gene

Name H4 clustered histone 2
Description Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H4 family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. This gene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Aug 2015]
Summary
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For example, acetylation at lysine 16 on histone H4 (H4K16Ac) inhibits compaction of nucleosomal arrays and modulates interactions with remodeling enzymes – a regulatory mechanism that influences higher order chromatin organization and facilitates proper DNA repair and mitotic progression (see."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition, specific methylation marks on histone H4—such as dimethylation at lysine 20 (H4K20me2)—serve as binding platforms for key DNA damage response factors like 53BP1, thereby targeting repair proteins to sites of double-strand breaks."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Acetylated H4 is also selectively recognized by bromodomain-containing proteins; for instance, BRD4’s tandem bromodomains bind di‐ or tetra–acetylated H4 tails, which underpins its role in mediating transcription and chromatin remodeling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n The dynamic regulation of H4 modifications is further exemplified during mitosis, where deacetylation of H4K16 by sirtuins, such as SirT2, facilitates chromatin condensation required for accurate chromosome segregation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In the context of centromere assembly, H4 associates with CENP-A to form uniquely compact, sub‐nucleosomal tetramers that are essential for centromere identity and stability."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, additional layers of regulation are provided by demethylases such as JMJD6—which targets arginine residues on H4—and PHF8, which specifically demethylates H4K20me1, thereby influencing cell cycle transitions and DNA repair pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": " Acetylation of H4 at DNA damage sites, mediated by histone acetyltransferase (HAT) complexes (including Trrap–Tip60), promotes chromatin relaxation for the timely recruitment of repair factors."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, H4C2 functions as a multifaceted scaffold whose post‐translational modifications—acetylation, methylation, and demethylation—integrate diverse intracellular cues. This regulation affects chromatin accessibility, transcriptional activity, genomic stability, and centromere function, emphasizing the pivotal role of H4C2 in cellular homeostasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}, {"type": "fg_f", "ref": "4"}, {"type": "fg_f", "ref": "13"}, {"type": "fg_f", "ref": "6"}, {"type": "fg_f", "ref": "8"}, {"type": "fg_f", "ref": "2"}, {"type": "fg_f", "ref": "10"}, {"type": "fg_f", "ref": "12"}, {"type": "fg_f", "ref": "7"}, {"type": "fg_f", "ref": "3"}, {"type": "fg_f", "ref": "9"}, {"type": "fg_f", "ref": "5"}, {"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Michael Shogren-Knaak, Haruhiko Ishii, Jian-Min Sun, et al. 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NCBI Gene ID 8366
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Download Associations
Predicted Functions View H4C2's ARCHS4 Predicted Functions.
Co-expressed Genes View H4C2's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View H4C2's ARCHS4 Predicted Functions.

Functional Associations

H4C2 has 604 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.

Click the + buttons to view associations for H4C2 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of H4C2 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of H4C2 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with H4C2 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with H4C2 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of H4C2 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of H4C2 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
PFOCR Pathway Figure Associations 2024 pathways involving H4C2 protein from the Wikipathways PFOCR 2024 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of H4C2 gene from the Rummagene Transcription Factor Associations 2026 dataset.
WikiPathways Pathways 2024 pathways involving H4C2 protein from the WikiPathways Pathways 2024 dataset.