H4C4 Gene

Name H4 clustered histone 4
Description Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H4 family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. This gene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Aug 2015]
Summary
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For example, acetylation at lysine 16 on histone H4 (H4K16Ac) has been shown to disrupt compact chromatin fiber formation and to antagonize ATP‐dependent remodeling, thereby increasing chromatin accessibility for transcription and other DNA‐mediated processes."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In parallel, methylation events on histone H4, such as dimethylation at lysine 20 (H4K20me2), serve as docking sites for pivotal DNA repair factors like 53BP1; these marks help to direct repair pathway choice at double‐strand breaks."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "6"}]}, {"type": "t", "text": " Moreover, removal of repressive H4K20 monomethylation by specific demethylases (e.g. PHF8) underpins proper cell cycle progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n The acetylation pattern of H4 also provides a combinatorial binding surface for bromodomain‐containing effectors. Proteins such as Brd4 and Brdt recognize di‐ or tetra–acetylated H4 tails, thereby linking histone modification patterns to recruitment of complexes that stimulate transcriptional elongation and mediate chromatin remodeling in critical processes like circadian gene regulation and spermatogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition, the assembly of centromeric chromatin requires the formation of a uniquely rigid CENP-A/H4 heterotetramer; this specialized nucleosomal structure is fundamental for centromere identity and accurate chromosome segregation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these studies illustrate that the diverse modifications on histone H4—collectively conceptualized here as the “H4 code” (or “H4C4”)—act as an integrated epigenetic platform. The balance between acetylation and methylation on H4 fine-tunes nucleosomal behavior, regulating access to the genome and thereby influencing transcription, DNA repair, cell cycle progression, and maintenance of genomic stability. Disruption of this balance has wide-ranging biological consequences, including impacts on aging and tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Michael Shogren-Knaak, Haruhiko Ishii, Jian-Min Sun, et al. 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NCBI Gene ID 8360
API
Download Associations
Predicted Functions View H4C4's ARCHS4 Predicted Functions.
Co-expressed Genes View H4C4's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View H4C4's ARCHS4 Predicted Functions.

Functional Associations

H4C4 has 509 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.

Click the + buttons to view associations for H4C4 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of H4C4 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of H4C4 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with H4C4 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with H4C4 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of H4C4 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
PFOCR Pathway Figure Associations 2024 pathways involving H4C4 protein from the Wikipathways PFOCR 2024 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of H4C4 gene from the Rummagene Transcription Factor Associations 2026 dataset.
WikiPathways Pathways 2024 pathways involving H4C4 protein from the WikiPathways Pathways 2024 dataset.