H4C5 Gene

Name H4 clustered histone 5
Description Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H4 family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. This gene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Aug 2015]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Histone H4 is a core component of the nucleosome whose tail serves as a versatile platform for multiple post‐translational modifications that regulate chromatin architecture and function. In its various modified states, H4 modulates higher order chromatin compaction, gene transcription, DNA repair, centromere identity, and cell cycle progression. For example, acetylation of H4 at lysine 16 (H4K16Ac) directly interferes with the formation of compact chromatin fibers and reduces the recruitment or activity of remodeling enzymes, thereby increasing chromatin accessibility and impacting transcription and DNA repair processes"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ", and."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " In addition, specific methylation marks on H4—such as dimethylation at lysine 20 (H4K20me2)—provide recognition sites for DNA damage response factors like 53BP1, which is recruited to double-strand breaks to promote repair fidelity"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "and."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Other modifications, including arginine methylation and deacetylation mediated by sirtuins (e.g. SIRT1 and SIRT2), further fine‐tune the balance between chromatin decondensation and condensation, influencing processes ranging from centromeric nucleosome assembly to cell cycle‐dependent chromatin restructuring"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ", and."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " Moreover, the combinatorial “readout” of H4 acetylation by bromodomain‐containing proteins such as BRD4 plays a critical role in sustaining transcriptional programs and establishing epigenetic memory, as evidenced during processes like neuronal plasticity and stress responses"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": "and."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": " In stem cell biology and aging, alterations in H4 modification patterns have been linked to changes in metabolic state and polarity, thereby influencing stem cell renewal and organismal homeostasis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": "and."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, the H4 “code”—comprising acetylation, methylation, and other modifications—acts as an integrative signal that modulates chromatin dynamics and orchestrates diverse cellular responses. The ability of these modifications to serve as recruitment platforms for effector proteins, to alter nucleosome interactions, and to influence higher order chromatin organization underscores their central role in maintaining genomic integrity and in regulating gene expression during development, stress responses, and disease.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Michael Shogren-Knaak, Haruhiko Ishii, Jian-Min Sun, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "SirT2 is a histone deacetylase with preference for histone H4 Lys 16 during mitosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Dev (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/gad.1412706"}], "href": "https://doi.org/10.1101/gad.1412706"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16648462"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16648462"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Anup Dey, Farideh Chitsaz, Asim Abbasi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The double bromodomain protein Brd4 binds to acetylated chromatin during interphase and mitosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1433065100"}], "href": "https://doi.org/10.1073/pnas.1433065100"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12840145"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12840145"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Maria Victoria Botuyan, Joseph Lee, Irene M Ward, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Cooperative binding of two acetylation marks on a histone tail by a single bromodomain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature08397"}], "href": "https://doi.org/10.1038/nature08397"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19794495"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19794495"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Bjorn Schwer, Brian J North, Roy A Frye, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The human silent information regulator (Sir)2 homologue hSIRT3 is a mitochondrial nicotinamide adenine dinucleotide-dependent deacetylase."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1083/jcb.200205057"}], "href": "https://doi.org/10.1083/jcb.200205057"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12186850"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12186850"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Raphael Margueron, Neil Justin, Katsuhito Ohno, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "SIRT1 redistribution on chromatin promotes genomic stability but alters gene expression during aging."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2008.10.025"}], "href": "https://doi.org/10.1016/j.cell.2008.10.025"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19041753"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19041753"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Heehyoung Lee, Andreas Herrmann, Jie-Hui Deng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Persistently activated Stat3 maintains constitutive NF-kappaB activity in tumors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Cell (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ccr.2009.02.015"}], "href": "https://doi.org/10.1016/j.ccr.2009.02.015"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19345327"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19345327"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Timothy W Bredy, Hao Wu, Cortney Crego, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Histone modifications around individual BDNF gene promoters in prefrontal cortex are associated with extinction of conditioned fear."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Learn Mem (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/lm.500907"}], "href": "https://doi.org/10.1101/lm.500907"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17522015"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17522015"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "James G Ryall, Stefania Dell'Orso, Assia Derfoul, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The NAD(+)-dependent SIRT1 deacetylase translates a metabolic switch into regulatory epigenetics in skeletal muscle stem cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Stem Cell (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.stem.2014.12.004"}], "href": "https://doi.org/10.1016/j.stem.2014.12.004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25600643"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25600643"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Maria Carolina Florian, Karin Dörr, Anja Niebel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cdc42 activity regulates hematopoietic stem cell aging and rejuvenation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Stem Cell (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.stem.2012.04.007"}], "href": "https://doi.org/10.1016/j.stem.2012.04.007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22560076"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22560076"}]}]}]}
NCBI Gene ID 8367
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Download Associations
Predicted Functions View H4C5's ARCHS4 Predicted Functions.
Co-expressed Genes View H4C5's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View H4C5's ARCHS4 Predicted Functions.

Functional Associations

H4C5 has 505 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.

Click the + buttons to view associations for H4C5 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of H4C5 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of H4C5 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with H4C5 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with H4C5 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of H4C5 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of H4C5 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of H4C5 gene from the Rummagene Transcription Factor Associations 2026 dataset.
WikiPathways Pathways 2024 pathways involving H4C5 protein from the WikiPathways Pathways 2024 dataset.