H4C6 Gene

Name H4 clustered histone 6
Description Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H4 family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. This gene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Aug 2015]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent work has revealed that post‐translational modifications on histone H4 play a central role in regulating chromatin structure and function. In these studies, acetylation of H4—most notably at lysine 16—has been shown to relax nucleosomal arrays, thereby inhibiting compaction and facilitating access of chromatin‐remodeling and DNA repair factors, while deacetylation is critical for assembling condensed, mitotic chromatin and centromeric chromatin formation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": " In parallel, methylation marks on H4—such as dimethylation of lysine 20—serve as recognition sites for specific effector modules (for example, tandem Tudor domains), which are essential for targeting proteins involved in the DNA damage response and repair."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Such modifications further influence centromere identity and proper nucleosome assembly by contributing to the recruitment of specialized histone variants."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Moreover, histone H4 marks are dynamically regulated by enzymes whose activities are coupled to cellular metabolic states and stress signals; for instance, shifts in H4 acetylation mediate the interplay between nutrient status and transcription, impacting processes as diverse as neurogenesis, muscle stem cell activation, and long‐term memory formation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "8"}]}, {"type": "t", "text": " Collectively, these findings underscore the multifaceted functions of H4 “C6” (that is, the H4 molecule and its complex modification repertoire) in coordinating chromatin dynamics, ensuring genomic integrity, and integrating environmental and intracellular signals to modulate gene expression.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Michael Shogren-Knaak, Haruhiko Ishii, Jian-Min Sun, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Histone H4-K16 acetylation controls chromatin structure and protein interactions."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Science (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/science.1124000"}], "href": "https://doi.org/10.1126/science.1124000"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16469925"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16469925"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Anup Dey, Farideh Chitsaz, Asim Abbasi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The double bromodomain protein Brd4 binds to acetylated chromatin during interphase and mitosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1433065100"}], "href": "https://doi.org/10.1073/pnas.1433065100"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12840145"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12840145"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Alejandro Vaquero, Michael B Scher, Dong Hoon Lee, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SirT2 is a histone deacetylase with preference for histone H4 Lys 16 during mitosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Dev (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/gad.1412706"}], "href": "https://doi.org/10.1101/gad.1412706"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16648462"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16648462"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Maria Victoria Botuyan, Joseph Lee, Irene M Ward, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2006.10.043"}], "href": "https://doi.org/10.1016/j.cell.2006.10.043"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17190600"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17190600"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Daniel R Foltz, Lars E T Jansen, Aaron O Bailey, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Centromere-specific assembly of CENP-a nucleosomes is mediated by HJURP."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2009.02.039"}], "href": "https://doi.org/10.1016/j.cell.2009.02.039"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19410544"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19410544"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Huadong Pei, Lindsey Zhang, Kuntian Luo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MMSET regulates histone H4K20 methylation and 53BP1 accumulation at DNA damage sites."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature09658"}], "href": "https://doi.org/10.1038/nature09658"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21293379"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21293379"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "James G Ryall, Stefania Dell'Orso, Assia Derfoul, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The NAD(+)-dependent SIRT1 deacetylase translates a metabolic switch into regulatory epigenetics in skeletal muscle stem cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Stem Cell (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.stem.2014.12.004"}], "href": "https://doi.org/10.1016/j.stem.2014.12.004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25600643"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25600643"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Timothy W Bredy, Hao Wu, Cortney Crego, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Histone modifications around individual BDNF gene promoters in prefrontal cortex are associated with extinction of conditioned fear."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Learn Mem (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/lm.500907"}], "href": "https://doi.org/10.1101/lm.500907"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17522015"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17522015"}]}]}]}
NCBI Gene ID 8361
API
Download Associations
Predicted Functions View H4C6's ARCHS4 Predicted Functions.
Co-expressed Genes View H4C6's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View H4C6's ARCHS4 Predicted Functions.

Functional Associations

H4C6 has 916 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.

Click the + buttons to view associations for H4C6 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of H4C6 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of H4C6 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with H4C6 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with H4C6 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of H4C6 gene from the Rummagene Transcription Factor Associations 2026 dataset.
WikiPathways Pathways 2024 pathways involving H4C6 protein from the WikiPathways Pathways 2024 dataset.