HCG18 Gene

Name HLA complex group 18 (non-protein coding)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long non‐coding RNA HCG18 has emerged as a multifunctional regulatory RNA whose expression and activity are context‐dependent. In numerous solid tumors—including lung adenocarcinoma"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ", colorectal cancer"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ", nasopharyngeal carcinoma"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "and hepatocellular carcinoma"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "—HCG18 is frequently upregulated, where it acts as a competing endogenous RNA (ceRNA) by “sponging” specific microRNAs to de‐repress key oncogenic targets. For example, in lung adenocarcinoma HCG18 sequesters miR‑34a‑5p to enhance HMMR expression, whereas in colorectal and nasopharyngeal carcinomas it binds miR‑1271 and miR‑140, respectively, to promote the activation of MTDH/Wnt/β‑catenin signaling and cyclin D1 expression."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": " Similarly, in hepatocellular carcinoma HCG18 functions through the miR‑214‑3p/CENPM axis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ", while in various other cancers—including gastric"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": ", epithelial ovarian"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ", pancreatic"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": ", osteosarcoma"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "and"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": ", head and neck"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": ", and melanoma"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": "—HCG18 modulates diverse downstream effectors (such as NOTCH1, TRAF4/5, EGFR, DDX3X, PGK1, FOXC1, FGFR1, and CDK16) via interactions with microRNAs including miR‑34c‑5p, miR‑29a/b, miR‑197‑3p, miR‑370‑3p, miR‑146a‑5p, miR‑188‑5p and miR‑133b"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}, {"type": "fg_f", "ref": "7"}, {"type": "fg_fs", "start_ref": "14", "end_ref": "16"}]}, {"type": "t", "text": ", and."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": " In contrast, in papillary thyroid carcinoma HCG18 is downregulated and appears to inhibit tumor progression via the miR‑106a‑5p/PPP2R2A axis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "17"}]}, {"type": "t", "text": ", highlighting possible tissue‐ or tumor‐specific functions."}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond tumor cell–intrinsic roles, HCG18 has been implicated in modulating the tumor microenvironment; for instance, its aberrant expression correlates with increased M2 macrophage infiltration in prostate cancer bone metastases"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "18"}]}, {"type": "t", "text": "and exosomally delivered HCG18 from gastric cancer cells facilitates M2 polarization via the miR‑875‑3p/KLF4 pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "19"}]}, {"type": "t", "text": " Moreover, in non‐oncologic contexts, HCG18 participates in inflammatory and degenerative processes such as intervertebral disc degeneration by modulating the miR‑146a‑5p/TRAF6/NF‑κB axis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "20"}]}, {"type": "t", "text": "and may even contribute to immune regulation in Alzheimer’s disease."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "21"}]}, {"type": "t", "text": " \n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, current evidence indicates that HCG18 functions primarily as a ceRNA, sequestering various microRNAs to fine‐tune the expression of oncogenes and other regulatory proteins that govern cell proliferation, migration, invasion, metabolic reprogramming, and immune interactions. This multifaceted regulatory role renders HCG18 a promising candidate for the development of novel diagnostic biomarkers and targeted therapeutic strategies in diverse pathological conditions."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}, {"type": "fg_f", "ref": "12"}, {"type": "fg_f", "ref": "18"}, {"type": "fg_f", "ref": "8"}, {"type": "fg_f", "ref": "6"}, {"type": "fg_f", "ref": "5"}, {"type": "fg_f", "ref": "17"}, {"type": "fg_f", "ref": "7"}, {"type": "fg_fs", "start_ref": "14", "end_ref": "16"}, {"type": "fg_f", "ref": "10"}, {"type": "fg_f", "ref": "22"}, {"type": "fg_f", "ref": "9"}, {"type": "fg_f", "ref": "24"}, {"type": "fg_f", "ref": "19"}, {"type": "fg_f", "ref": "11"}, {"type": "fg_f", "ref": "25"}, {"type": "fg_f", "ref": "21"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Wei Li, Tinghong Pan, Wei Jiang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "HCG18/miR-34a-5p/HMMR axis accelerates the progression of lung adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Pharmacother (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biopha.2020.110217"}], "href": "https://doi.org/10.1016/j.biopha.2020.110217"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32559619"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32559619"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Shunle Li, Tao Wu, Di Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The long non-coding RNA HCG18 promotes the growth and invasion of colorectal cancer cells through sponging miR-1271 and upregulating MTDH/Wnt/β-catenin."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Exp Pharmacol Physiol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/1440-1681.13230"}], "href": "https://doi.org/10.1111/1440-1681.13230"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31854468"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31854468"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "L Li, T-T Ma, Y-H Ma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA HCG18 contributes to nasopharyngeal carcinoma development by modulating miR-140/CCND1 and Hedgehog signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Rev Med Pharmacol Sci (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26355/eurrev_201912_19678"}], "href": "https://doi.org/10.26355/eurrev_201912_19678"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31841193"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31841193"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yuepei Zou, Zhonghua Sun, Shuangming Sun "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA HCG18 contributes to the progression of hepatocellular carcinoma via miR-214-3p/CENPM axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biochem (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/jb/mvaa073"}], "href": "https://doi.org/10.1093/jb/mvaa073"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32663252"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32663252"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "W Niu, L-Y Guo, J-Y Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "E2F1-induced upregulation of lncRNA HCG18 stimulates proliferation and migration in gastric cancer by binding to miR-197-3p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Rev Med Pharmacol Sci (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26355/eurrev_202010_23207"}], "href": "https://doi.org/10.26355/eurrev_202010_23207"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33090399"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33090399"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Fan Zhang, Bai-Hua Luo, Qi-Hui Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA HCG18 upregulates TRAF4/TRAF5 to facilitate proliferation, migration and EMT of epithelial ovarian cancer by targeting miR-29a/b."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s10020-021-00415-y"}], "href": "https://doi.org/10.1186/s10020-021-00415-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34983361"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34983361"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Xiaobo Pan, Guangyao Chen, Wenhao Hu "}, {"type": "b", "children": [{"type": "t", "text": "lncRNA HLA Complex Group 18 (HCG18) Facilitated Cell Proliferation, Invasion, and Migration of Prostate Cancer Through Modulating miR-370-3p/DDX3X Axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Reprod Sci (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s43032-021-00614-2"}], "href": "https://doi.org/10.1007/s43032-021-00614-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34708395"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34708395"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Xiaohui Pan, Jin Guo, Canjun Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA HCG18 promotes osteosarcoma growth by enhanced aerobic glycolysis via the miR-365a-3p/PGK1 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Mol Biol Lett (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s11658-021-00304-6"}], "href": "https://doi.org/10.1186/s11658-021-00304-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34991445"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34991445"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Zhipan Zheng, Kai Lin "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA HCG18 promotes cell multiplication and metastasis by miR-148b/ETV5 regulation in osteosarcoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Transl Res (2021)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34377255"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34377255"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Bin Mao, Fan Wang, Jingxia Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA human leucocyte antigen complex group-18 HCG18 (HCG18) promoted cell proliferation and migration in head and neck squamous cell carcinoma through cyclin D1-WNT pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2022.2060452"}], "href": "https://doi.org/10.1080/21655979.2022.2060452"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35389764"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35389764"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Chengwei Zhang, Haitao Lv, Fengling Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA HCG18 facilitates melanoma progression by modulating miR-324-5p/CDK16 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Transl Res (2022)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35273726"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35273726"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Zhihui Xu, Banggao Huang, Qi Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NOTCH1 regulates the proliferation and migration of bladder cancer cells by cooperating with long non-coding RNA HCG18 and microRNA-34c-5p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.27954"}], "href": "https://doi.org/10.1002/jcb.27954"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30426533"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30426533"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Yan Liu, Wenji Lin, Yangyang Dong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA HCG18 up-regulates the expression of WIPF1 and YAP/TAZ by inhibiting miR-141-3p in gastric cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/cam4.3288"}], "href": "https://doi.org/10.1002/cam4.3288"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32725768"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32725768"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Xianwu Yang, Run Liu "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA HCG18 promotes gastric cancer progression by regulating miRNA-146a-5p/tumor necrosis factor receptor-associated factor 6 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2022.2034565"}], "href": "https://doi.org/10.1080/21655979.2022.2034565"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35240920"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35240920"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Zhongquan Zhao, Jiechao Chen, Dezhi Xia "}, {"type": "b", "children": [{"type": "t", "text": "Knockdown of HCG18 Inhibits Cell Viability, Migration and Invasion in Pediatric Osteosarcoma by Targeting miR-188-5p/FOXC1 Axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biotechnol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12033-021-00343-6"}], "href": "https://doi.org/10.1007/s12033-021-00343-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34041718"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34041718"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Hongbin Peng, Pingjiang Ge "}, {"type": "b", "children": [{"type": "t", "text": "Long non‑coding RNA HCG18 facilitates the progression of laryngeal and hypopharyngeal squamous cell carcinoma by upregulating FGFR1 via miR‑133b."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2021.12562"}], "href": "https://doi.org/10.3892/mmr.2021.12562"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34878161"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34878161"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Yue Zhu, Jindan Zhao, Langping Tan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA-HCG18 regulates the viability, apoptosis, migration, invasion and epithelial-mesenchymal transition of papillary thyroid cancer cells via regulating the miR-106a-5p/PPP2R2A axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pathol Res Pract (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.prp.2021.153395"}], "href": "https://doi.org/10.1016/j.prp.2021.153395"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33798913"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33798913"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Yanfang Chen, Zheng Chen, Jian Mo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of HCG18 and MCM3AP-AS1 That Associate With Bone Metastasis, Poor Prognosis and Increased Abundance of M2 Macrophage Infiltration in Prostate Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Technol Cancer Res Treat (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1177/1533033821990064"}], "href": "https://doi.org/10.1177/1533033821990064"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33596783"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33596783"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Lin Xin, You Wu, Chuan Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Exosome-mediated transfer of lncRNA HCG18 promotes M2 macrophage polarization in gastric cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Immunol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molimm.2021.10.011"}], "href": "https://doi.org/10.1016/j.molimm.2021.10.011"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34735868"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34735868"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Yanhai Xi, Tingwang Jiang, Weiheng Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding HCG18 promotes intervertebral disc degeneration by sponging miR-146a-5p and regulating TRAF6 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-017-13364-6"}], "href": "https://doi.org/10.1038/s41598-017-13364-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29038477"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29038477"}]}, {"type": "r", "ref": 21, "children": [{"type": "t", "text": "Yinghao Li, Hongshuo Shi, Tingting Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Establishing a competing endogenous RNA (ceRNA)-immunoregulatory network associated with the progression of Alzheimer's disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ann Transl Med (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.21037/atm-21-6762."}], "href": "https://doi.org/10.21037/atm-21-6762."}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35282112"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35282112"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "Zhi Yuan, Yuan Zhang, Peng Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA HLA complex group 18 promotes gastric cancer progression by targeting microRNA-370-3p expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Pharm Pharmacol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/jpp/rgab134"}], "href": "https://doi.org/10.1093/jpp/rgab134"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34618022"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34618022"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Wei Ren, Guangxia Xi, Xing Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA HCG18 promotes M1 macrophage polarization through regulating the miR-146a/TRAF6 axis, facilitating the progression of diabetic peripheral neuropathy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biochem (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11010-020-03923-3"}], "href": "https://doi.org/10.1007/s11010-020-03923-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32996080"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32996080"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Shuang Li, Xu Wang, Tianfeng Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of the regulatory role of lncRNA HCG18 in myasthenia gravis by integrated bioinformatics and experimental analyses."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Transl Med (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12967-021-03138-0"}], "href": "https://doi.org/10.1186/s12967-021-03138-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34794447"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34794447"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "Shiwen Wang, Yuyin Lin, Yue Zhong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The long noncoding RNA HCG18 participates in PM2.5-mediated vascular endothelial barrier dysfunction."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.104073"}], "href": "https://doi.org/10.18632/aging.104073"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33203802"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33203802"}]}]}]}
NCBI Gene ID 414777
API
Download Associations
Predicted Functions View HCG18's ARCHS4 Predicted Functions.
Co-expressed Genes View HCG18's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View HCG18's ARCHS4 Predicted Functions.

Functional Associations

HCG18 has 2,286 functional associations with biological entities spanning 8 categories (molecular profile, organism, chemical, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 33 datasets.

Click the + buttons to view associations for HCG18 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of HCG18 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of HCG18 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of HCG18 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of HCG18 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of HCG18 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of HCG18 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of HCG18 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
CTD Gene-Chemical Interactions chemicals interacting with HCG18 gene/protein from the curated CTD Gene-Chemical Interactions dataset.
dbGAP Gene-Trait Associations traits associated with HCG18 gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at HCG18 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of HCG18 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of HCG18 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GDSC Cell Line Gene Expression Profiles cell lines with high or low expression of HCG18 gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing HCG18 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of HCG18 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of HCG18 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of HCG18 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of HCG18 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of HCG18 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of HCG18 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx eQTL SNPs regulating expression of HCG18 gene from the GTEx eQTL dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of HCG18 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of HCG18 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWASdb SNP-Disease Associations diseases associated with HCG18 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with HCG18 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of HCG18 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of HCG18 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of HCG18 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of HCG18 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain HCG18 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations gene perturbations changing expression of HCG18 gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at HCG18 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of HCG18 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.