| Name | HLA complex group 26 (non-protein coding) |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long non‑coding RNA HCG26 has emerged as a multifunctional regulatory molecule implicated in diverse human diseases. In one study of psoriatic disease, subtle but consistent differences in DNA methylation were detected within an HCG26‐associated region in sperm cells, and this epigenetic mark was prioritized among differentially methylated regions linked to skin and/or joint pathologies, suggesting that aberrant regulation of HCG26 may be one contributor to the missing heritability in psoriatic arthritis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In reproductive biology, HCG26 was found to be upregulated in granulosa cells from women with polycystic ovary syndrome (PCOS) and to correlate with antral follicle count; functional experiments in ovarian cell lines demonstrated that HCG26 promotes cell proliferation and modulates steroidogenesis—its knockdown not only inhibited cell‐cycle progression but also enhanced aromatase expression and estradiol production—thus implicating HCG26 in both folliculogenesis and androgen–estrogen balance."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Moreover, in the context of ischemic stroke, high‐throughput RNA sequencing of patient blood samples identified HCG26 among several long non‑coding RNAs with altered expression, indicating a potential role in the regulatory networks underpinning stroke pathophysiology."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Finally, structural genomic analyses in nasopharyngeal carcinoma uncovered copy number variations overlapping a region that includes HCG26, with a suggestive association to disease susceptibility, thereby extending the potential clinical impact of HCG26 to oncogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, these findings highlight the multifaceted involvement of HCG26 in mediating epigenetic regulation, cell proliferation, and cellular differentiation processes, as well as its possible contribution to cancer predisposition, warranting further investigations into its mechanistic roles across different disease contexts.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Remy A Pollock, Laila Zaman, Vinod Chandran, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Epigenome-wide analysis of sperm cells identifies IL22 as a possible germ line risk locus for psoriatic arthritis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0212043"}], "href": "https://doi.org/10.1371/journal.pone.0212043"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30779748"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30779748"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yu-Dong Liu, Ying Li, Shu-Xian Feng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Noncoding RNAs: Potential Regulators Involved in the Pathogenesis of Polycystic Ovary Syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Endocrinology (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/en.2017-00605"}], "href": "https://doi.org/10.1210/en.2017-00605"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28938484"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28938484"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Wenzhen He, Duncan Wei, De Cai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Altered Long Non-Coding RNA Transcriptomic Profiles in Ischemic Stroke."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Gene Ther (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1089/hum.2017.064"}], "href": "https://doi.org/10.1089/hum.2017.064"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29284304"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29284304"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Joyce Siew Yong Low, Yoon Ming Chin, Taisei Mushiroda, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Genome Wide Study of Copy Number Variation Associated with Nasopharyngeal Carcinoma in Malaysian Chinese Identifies CNVs at 11q14.3 and 6p21.3 as Candidate Loci."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0145774"}], "href": "https://doi.org/10.1371/journal.pone.0145774"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26730743"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26730743"}]}]}]}
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| Synonyms | 3.8-1, BCX205D4.4, NCRNA00191, BPG181B23.4 |
| NCBI Gene ID | 352961 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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HCG26 has 836 functional associations with biological entities spanning 6 categories (molecular profile, organism, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 27 datasets.
Click the + buttons to view associations for HCG26 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of HCG26 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| BioGPS Cell Line Gene Expression Profiles | cell lines with high or low expression of HCG26 gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset. | |
| BioGPS Human Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of HCG26 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of HCG26 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of HCG26 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of HCG26 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of HCG26 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| CMAP Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of HCG26 gene from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of HCG26 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at HCG26 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of HCG26 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of HCG26 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GDSC Cell Line Gene Expression Profiles | cell lines with high or low expression of HCG26 gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of HCG26 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of HCG26 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of HCG26 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of HCG26 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of HCG26 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GWAS Catalog SNP-Phenotype Associations | phenotypes associated with HCG26 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with HCG26 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with HCG26 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of HCG26 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of HCG26 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of HCG26 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations | gene perturbations changing expression of HCG26 gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at HCG26 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of HCG26 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |