HEXD Gene

Name hexosaminidase D
Description Enables beta-N-acetylhexosaminidase activity. Predicted to be involved in carbohydrate metabolic process. Located in extracellular vesicle. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Hexosaminidase D (HexD), encoded by the "}, {"type": "i", "children": [{"type": "t", "text": "HEXDC"}]}, {"type": "t", "text": " gene, is a recently characterized member of the mammalian β‐hexosaminidase family that is distinct from the classical lysosomal hexosaminidases. Studies have shown that HexD is a nucleocytoplasmic enzyme whose catalytic function involves the cleavage of terminal N‐acetylhexosamine residues from diverse substrates. Detailed kinetic and mechanistic investigations reveal that HexD operates as a retaining glycosidase through a substrate-assisted mechanism, with a marked preference for β-N-acetylgalactosaminide substrates over β-N-acetylglucosaminide, exhibiting an optimal pH near neutrality (approximately 6.5–7.0). Key catalytic residues, such as Asp148 and Glu149, have been identified as critical for its activity, and the enzyme is potently inhibited by specific inhibitors like Gal-NAG-thiazoline. Moreover, HexD is thermostable and, in human tissues, accounts for a substantial portion of total β-N-acetylgalactosaminidase activity—for instance, contributing to about 50% of the activity measured in synovial membranes and fibroblasts, where its expression is modulated by factors such as transforming growth factor β. Its localization within both the nucleus and cytoplasm, along with its presence in extracellular vesicles, suggests roles not only in routine glycan catabolism but also in regulatory cellular processes. In addition, altered methylation patterns in "}, {"type": "i", "children": [{"type": "t", "text": "HEXDC"}]}, {"type": "t", "text": " have been linked to disease states, implying a connection of HexD with immune system regulation and even neuropsychiatric conditions. Collectively, these findings establish HexD as the third major class 20 glycosidase in mammals, with unique substrate specificity and catalytic properties that point to considerable physiological and potentially pathophysiological significance."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Mária Pásztói, Barbara Sódar, Petra Misják, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The recently identified hexosaminidase D enzyme substantially contributes to the elevated hexosaminidase activity in rheumatoid arthritis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Immunol Lett (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.imlet.2012.10.012"}], "href": "https://doi.org/10.1016/j.imlet.2012.10.012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23099419"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23099419"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Matthew G Alteen, Verena Oehler, Ivana Nemčovičová, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mechanism of Human Nucleocytoplasmic Hexosaminidase D."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochemistry (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1021/acs.biochem.5b01285"}], "href": "https://doi.org/10.1021/acs.biochem.5b01285"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27149221"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27149221"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Martin Gutternigg, Dubravko Rendić, Regina Voglauer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mammalian cells contain a second nucleocytoplasmic hexosaminidase."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem J (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1042/BJ20081630"}], "href": "https://doi.org/10.1042/BJ20081630"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19040401"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19040401"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Jonathan Knights, Yasunori Sato, Nahoko Kaniwa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic factors associated with gemcitabine pharmacokinetics, disposition, and toxicity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pharmacogenet Genomics (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/FPC.0000000000000016"}], "href": "https://doi.org/10.1097/FPC.0000000000000016"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24225399"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24225399"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Clara Snijders, Adam X Maihofer, Andrew Ratanatharathorn, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Longitudinal epigenome-wide association studies of three male military cohorts reveal multiple CpG sites associated with post-traumatic stress disorder."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Epigenetics (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13148-019-0798-7"}], "href": "https://doi.org/10.1186/s13148-019-0798-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31931860"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31931860"}]}]}]}
NCBI Gene ID 284004
API
Download Associations
Predicted Functions View HEXD's ARCHS4 Predicted Functions.
Co-expressed Genes View HEXD's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View HEXD's ARCHS4 Predicted Functions.

Functional Associations

HEXD has 1,158 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 32 datasets.

Click the + buttons to view associations for HEXD from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of HEXD gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of HEXD gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of HEXD gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing HEXD protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 cellular components containing HEXD protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with HEXD protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DeepCoverMOA Drug Mechanisms of Action small molecule perturbations with high or low expression of HEXD protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by HEXD gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with HEXD gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Cellular Component Annotations 2023 cellular components containing HEXD protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing HEXD protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by HEXD gene from the curated GO Molecular Function Annotations 2023 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by HEXD gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of HEXD gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of HEXD gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of HEXD gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with HEXD gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of HEXD gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of HEXD gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
KEGG Pathways 2026 pathways involving HEXD protein from the KEGG Pathways 2026 dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of HEXD gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of HEXD gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of HEXD gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of HEXD gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of HEXD gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of HEXD gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of HEXD gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of HEXD gene from the RummaGEO Gene Perturbation Signatures dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of HEXD gene from the Sci-Plex Drug Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of HEXD protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with HEXD protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2024 pathways involving HEXD protein from the WikiPathways Pathways 2024 dataset.