| Name | HM13 antisense RNA 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n HM13‐AS1 is a long non‐coding RNA that appears to be involved in the regulation of cancer cell growth. In a high‐throughput CRISPR‐Cas9 deletion screen, perturbation of candidate lncRNAs—including HM13‐AS1—was shown to either enhance or suppress tumor cell proliferation, suggesting that HM13‐AS1 may function as a modulator of oncogenic or tumor suppressive cellular programs."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In a separate multi‐omics analysis of colorectal cancer, deregulation of lncRNAs driven by copy number variations was linked to poor patient prognosis. Although HM13‐AS1 was not explicitly listed among the ten lncRNAs forming the prognostic signature, its categorization among functionally important lncRNAs highlights the broader role that genomic and epigenomic aberrations can play in disease progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, while large‐scale genome wide association studies of complex traits such as corneal curvature have primarily implicated coding genes and other non‐coding elements, the diversity of regulatory roles occupied by lncRNAs like HM13‐AS1 reinforces the concept that non‐coding RNAs can have pleiotropic effects. These effects may extend from cell proliferation in cancer to the regulation of structural and developmental eye characteristics, emphasizing the extensive influence of non‐coding transcription in human biology."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, HM13‐AS1 functions as a key regulatory component within the network of long non‐coding RNAs influencing cell growth and malignancy, and its study within various genomic contexts underscores the importance of non‐coding elements in both oncogenesis and other complex human traits.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Shiyou Zhu, Wei Li, Jingze Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR-Cas9 library."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Biotechnol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nbt.3715"}], "href": "https://doi.org/10.1038/nbt.3715"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27798563"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27798563"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Huimin Liu, Xiaoyu Gu, Guihua Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Copy number variations primed lncRNAs deregulation contribute to poor prognosis in colorectal cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.102168"}], "href": "https://doi.org/10.18632/aging.102168"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31442207"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31442207"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Qiao Fan, Alfred Pozarickij, Nicholas Y Q Tan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Commun Biol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s42003-020-0802-y"}], "href": "https://doi.org/10.1038/s42003-020-0802-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32193507"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32193507"}]}]}]}
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| NCBI Gene ID | 100874042 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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HM13-AS1 has 617 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.
Click the + buttons to view associations for HM13-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of HM13-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of HM13-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of HM13-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of HM13-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of HM13-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of HM13-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of HM13-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |