| Name | HNF1A antisense RNA 1 |
| Description | Biomarker of colon cancer and stomach cancer. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n HNF1A‐AS1 is a long noncoding RNA that appears to be frequently dysregulated in various human cancers and exerts context‐dependent functions in tumor biology. In several tumor types – including esophageal adenocarcinoma, gastric cancer, lung adenocarcinoma, gastric cancer, colorectal cancer, bladder cancer, non‐small cell lung cancer (NSCLC), hepatocellular carcinoma (HCC) and glioma – HNF1A‐AS1 is reported to be upregulated and to promote oncogenic processes such as cell proliferation, cell cycle progression, migration, invasion, metastasis, angiogenesis and chemoresistance by acting as a competing endogenous RNA (ceRNA) or “sponge” for specific microRNAs. For example, HNF1A‐AS1 sponges miR‐661 to modulate chromatin/nucleosome assembly and induce H19 expression in esophageal adenocarcinoma"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ", and it functions as a ceRNA for miR‐661, miR‐17‐5p, miR‐30b–3p, miR‐149–5p, miR‐363–3p or related miRNAs to activate cell cycle regulators such as CDC34, cyclin/CDK complexes, or to modulate key signaling pathways including the Wnt/β‐catenin, Notch and PI3K/AKT cascades in gastric cancer, lung adenocarcinoma and NSCLC."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "2", "end_ref": "5"}]}, {"type": "t", "text": " In other studies, HNF1A‐AS1 was found to interact with epigenetic modifiers such as EZH2 and SHP‐1 thereby influencing histone modifications and transcriptional programs that regulate both cell cycle and epithelial–mesenchymal transition—for instance, by repressing inhibitors such as p21 or NKD1 in HCC"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "and by enhancing Notch signaling in oral squamous cell carcinoma."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, in colorectal and bladder cancers as well as in glioma, elevated HNF1A‐AS1 expression is correlated with aggressive clinicopathological features and poorer prognoses."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "10"}]}, {"type": "t", "text": " In contrast, in laryngeal squamous cell carcinoma, epigenetic hypermethylation leads to HNF1A‐AS1 downregulation, where it appears to act as a tumor suppressor by inhibiting epithelial–mesenchymal transition."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": " Additionally, studies in colon cancer have revealed roles for HNF1A‐AS1 in promoting angiogenesis via a ceRNA mechanism involving transcriptional regulation"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": "and in another colon cancer report, HNF1A‐AS1 was associated with enhanced proliferation and metastatic potential."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": " Finally, in the context of breast cancer, HNF1A‐AS1 has been implicated in tamoxifen resistance through its modulation of microRNA‐mediated gene expression"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "14"}]}, {"type": "t", "text": ", and in glioma, it promotes tumor growth by sponging miR‐32–5p to upregulate targets such as SOX4."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "15"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, the available evidence suggests that HNF1A‐AS1 primarily acts as an oncogenic factor by regulating key cell cycle, survival, and metastatic pathways in a tissue‐dependent manner. Its capability to interact with microRNAs and epigenetic regulators, and its correlation with advanced tumor stage and poor patient survival, make HNF1A‐AS1 a promising candidate as both a prognostic biomarker and a therapeutic target in multiple cancer types.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xue Yang, Jee Hoon Song, Yulan Cheng, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "EGR1-Mediated Transcription of lncRNA-HNF1A-AS1 Promotes Cell-Cycle Progression in Gastric Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Res (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/0008-5472.CAN-18-1011"}], "href": "https://doi.org/10.1158/0008-5472.CAN-18-1011"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30185552"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30185552"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Ying Wu, Hongbing Liu, Xuefei Shi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The long non-coding RNA HNF1A-AS1 regulates proliferation and metastasis in lung adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.3247"}], "href": "https://doi.org/10.18632/oncotarget.3247"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25863539"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25863539"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Guoyu Zhang, Xiaokang An, Huiya Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA HNF1A-AS1 promotes cell proliferation and invasion via regulating miR-17-5p in non-small cell lung cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Pharmacother (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biopha.2017.12.080"}], "href": "https://doi.org/10.1016/j.biopha.2017.12.080"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29289833"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29289833"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Lu Liu, Yanzhi Chen, Qiaoqing Li, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA HNF1A-AS1 promotes hepatocellular carcinoma cell proliferation by repressing NKD1 and P21 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Pharmacother (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biopha.2017.01.031"}], "href": "https://doi.org/10.1016/j.biopha.2017.01.031"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28292020"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28292020"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Zhe Liu, Hong Li, Sumeng Fan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "STAT3-induced upregulation of long noncoding RNA HNF1A-AS1 promotes the progression of oral squamous cell carcinoma via activating Notch signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Biol Ther (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15384047.2018.1529119"}], "href": "https://doi.org/10.1080/15384047.2018.1529119"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30404566"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30404566"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Xin Zhang, Yumin Xiong, Fengying Tang, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "MYC-activated lncRNA HNF1A-AS1 overexpression facilitates glioma progression via cooperating with miR-32-5p/SOX4 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/cam4.3186"}], "href": "https://doi.org/10.1002/cam4.3186"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33448691"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33448691"}]}]}]}
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| Synonyms | NCRNA00262, C12ORF27 |
| NCBI Gene ID | 283460 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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HNF1A-AS1 has 1,052 functional associations with biological entities spanning 7 categories (molecular profile, organism, disease, phenotype or trait, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 23 datasets.
Click the + buttons to view associations for HNF1A-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of HNF1A-AS1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of HNF1A-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of HNF1A-AS1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of HNF1A-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with HNF1A-AS1 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of HNF1A-AS1 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of HNF1A-AS1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of HNF1A-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at HNF1A-AS1 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of HNF1A-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of HNF1A-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GAD Gene-Disease Associations | diseases associated with HNF1A-AS1 gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with HNF1A-AS1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of HNF1A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of HNF1A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of HNF1A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of HNF1A-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of HNF1A-AS1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of HNF1A-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain HNF1A-AS1 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of HNF1A-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at HNF1A-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of HNF1A-AS1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |