HOTAIRM1 Gene

HGNC Family Non-coding RNAs
Name HOXA transcript antisense RNA, myeloid-specific 1
Description This non-coding locus is located in the HOX gene cluster. Transcription of this locus is induced by retinoic acid, and transcripts likely function in regulation of myelopoiesis through transcriptional activation of several genes in the HOXA cluster, in addition to several beta-2 integrins. [provided by RefSeq, Jan 2013]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n HOTAIRM1 is a long non‐coding RNA transcribed from the HOXA cluster that plays diverse, context‐dependent roles in both normal differentiation and tumorigenesis. In glioblastoma and pancreatic ductal adenocarcinoma, HOTAIRM1 is frequently overexpressed, where it contributes to tumor progression by promoting cell proliferation, migration, invasion, and by altering cell cycle dynamics through epigenetic regulation of HOXA genes and modulation of histone modifications."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": " In the immune context, HOTAIRM1 is implicated in myeloid cell development; its expression enhances HOXA1 levels in myeloid‐derived suppressor cells, thereby downregulating immunosuppressive factors and modulating anti-tumor immunity, as observed in lung cancer models and in chronic viral infections."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In differentiation processes, HOTAIRM1 fosters osteogenesis in mesenchymal stem cells and dental follicle stem cells by activating key osteogenic transcription factors—such as RUNX2 and HOXA2—via interactions with histone modifiers and DNA methylation regulators."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " In the kidney, a predominant cytoplasmic isoform of HOTAIRM1 (HM1-3) is necessary for renal lineage differentiation and appears to suppress hypoxia-inducible angiogenic pathways in clear cell renal cell carcinoma."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " Moreover, in thyroid cancer, HOTAIRM1 is upregulated and contributes to tumor progression by regulating microRNA-mediated signaling pathways, such as the miR-148a/Wnt10b axis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": ", whereas in acute promyelocytic leukemia, reduced HOTAIRM1 levels—linked to increased Skp2 activity—impair differentiation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": " Collectively, these studies underscore the multifaceted regulatory functions of HOTAIRM1 in modulating gene expression via epigenetic mechanisms and microRNA sponging, which in turn affect cell differentiation, immune responses, and tumor progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Qi Li, Chengya Dong, Jiayue Cui, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Over-expressed lncRNA HOTAIRM1 promotes tumor growth and invasion through up-regulating HOXA1 and sequestering G9a/EZH2/Dnmts away from the HOXA1 gene in glioblastoma multiforme."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Clin Cancer Res (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13046-018-0941-x"}], "href": "https://doi.org/10.1186/s13046-018-0941-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30376874"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30376874"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yongyun Luo, Yaqin He, Xiaoping Ye, et al. "}, {"type": "b", "children": [{"type": "t", "text": "High Expression of Long Noncoding RNA HOTAIRM1 is Associated with the Proliferation and Migration in Pancreatic Ductal Adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pathol Oncol Res (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12253-018-00570-4"}], "href": "https://doi.org/10.1007/s12253-018-00570-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30613920"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30613920"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yunfei Hao, Xiaoli Li, Hecheng Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Over-expression of long noncoding RNA HOTAIRM1 promotes cell proliferation and invasion in human glioblastoma by up-regulating SP1 via sponging miR-137."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuroreport (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/WNR.0000000000001380"}], "href": "https://doi.org/10.1097/WNR.0000000000001380"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31876683"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31876683"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xinyu Tian, Jie Ma, Ting Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Non-Coding RNA HOXA Transcript Antisense RNA Myeloid-Specific 1-HOXA1 Axis Downregulates the Immunosuppressive Activity of Myeloid-Derived Suppressor Cells in Lung Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Immunol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fimmu.2018.00473"}], "href": "https://doi.org/10.3389/fimmu.2018.00473"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29662483"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29662483"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Bal Krishna Chand Thakuri, Jinyu Zhang, Juan Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA HOTAIRM1 promotes MDSC expansion and suppressive functions through the HOXA1-miR124 axis during HCV infection."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-020-78786-1"}], "href": "https://doi.org/10.1038/s41598-020-78786-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33328510"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33328510"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Lei Fu, Shifang Peng, Wanfeng Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA HOTAIRM1 promotes osteogenesis by controlling JNK/AP-1 signalling-mediated RUNX2 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.14620"}], "href": "https://doi.org/10.1111/jcmm.14620"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31512358"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31512358"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Zhengyuan Chen, Jinxuan Zheng, Hong Hong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "lncRNA HOTAIRM1 promotes osteogenesis of hDFSCs by epigenetically regulating HOXA2 via DNMT1 in vitro."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.29695"}], "href": "https://doi.org/10.1002/jcp.29695"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32324272"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32324272"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Michael J Hamilton, Matthew Young, Kay Jang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "HOTAIRM1 lncRNA is downregulated in clear cell renal cell carcinoma and inhibits the hypoxia pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Lett (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.canlet.2019.12.022"}], "href": "https://doi.org/10.1016/j.canlet.2019.12.022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31862408"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31862408"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Ling Zhang, Jin Zhang, Shujing Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genomic amplification of long noncoding RNA HOTAIRM1 drives anaplastic thyroid cancer progression via repressing miR-144 biogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA Biol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15476286.2020.1819670"}], "href": "https://doi.org/10.1080/15476286.2020.1819670"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32951513"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32951513"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Chenyao Li, Xinxin Chen, Tao Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "lncRNA HOTAIRM1 regulates cell proliferation and the metastasis of thyroid cancer by targeting Wnt10b."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/or.2020.7919"}], "href": "https://doi.org/10.3892/or.2020.7919"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33650656"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33650656"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Isatou Bah, Dima Youssef, Zhi Q Yao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Inhibiting KDM6A Demethylase Represses Long Non-Coding RNA Hotairm1 Transcription in MDSC During Sepsis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Immunol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fimmu.2022.823660"}], "href": "https://doi.org/10.3389/fimmu.2022.823660"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35185915"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35185915"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Yuqiao Zhao, Weina Wang, Canghai Guan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA HOTAIRM1 in human cancers."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Chim Acta (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cca.2020.10.011"}], "href": "https://doi.org/10.1016/j.cca.2020.10.011"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33058847"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33058847"}]}]}]}
Synonyms HOXA1-AS1, NCRNA00179, HOXA-AS1
NCBI Gene ID 100506311
API
Download Associations
Predicted Functions View HOTAIRM1's ARCHS4 Predicted Functions.
Co-expressed Genes View HOTAIRM1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View HOTAIRM1's ARCHS4 Predicted Functions.

Functional Associations

HOTAIRM1 has 1,340 functional associations with biological entities spanning 6 categories (molecular profile, organism, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 22 datasets.

Click the + buttons to view associations for HOTAIRM1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of HOTAIRM1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of HOTAIRM1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with HOTAIRM1 gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of HOTAIRM1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of HOTAIRM1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of HOTAIRM1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at HOTAIRM1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of HOTAIRM1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of HOTAIRM1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with HOTAIRM1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing HOTAIRM1 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of HOTAIRM1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of HOTAIRM1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of HOTAIRM1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of HOTAIRM1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of HOTAIRM1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of HOTAIRM1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of HOTAIRM1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of HOTAIRM1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of HOTAIRM1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of HOTAIRM1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at HOTAIRM1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.