| HGNC Family | Non-coding RNAs |
| Name | HOXA distal transcript antisense RNA |
| Description | This gene produces a long RNA in antisense to the HOXA gene cluster. This transcript may regulate expression of HOXA genes in cis. This gene is upregulated in tumors and is implicated in the promotion of cell proliferation. [provided by RefSeq, Dec 2017] |
| Summary |
{"type": "root", "children": [{"type": "t", "text": "<div>\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Long non‐coding RNA HOTTIP acts as a central oncogenic regulator in diverse cancers by re‐programming chromatin states and modulating key transcriptional networks. In hepatocellular carcinoma and gastric cancer, HOTTIP is significantly up‐regulated and forms a bidirectional regulatory loop with 5′ HOXA genes (especially HOXA13), via recruitment of the WDR5/MLL complex to induce H3K4 trimethylation, thereby enhancing proliferation, invasion, metastasis, and correlating with poor clinical outcome."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In pancreatic ductal adenocarcinoma, HOTTIP overexpression drives tumor progression and chemoresistance—mediated at least in part through activation of HOXA13 transcription and engagement of the Wnt/β-catenin pathway—with a further role in maintaining cancer stem cell properties."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In esophageal squamous cell carcinoma and papillary thyroid carcinoma, HOTTIP contributes to epithelial-mesenchymal transition and promotes invasion and migration by functioning as a competing endogenous RNA that sequesters microRNAs (e.g., miR-30b and miR-637), thereby alleviating repression of downstream oncogenic targets."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, in small cell lung cancer HOTTIP exerts oncogenic effects by binding miR-216a to relieve its suppression of anti-apoptotic factors such as BCL-2, which enhances chemoresistance and tumor growth"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": ", and in ovarian cancer, HOTTIP promotes immune evasion by interacting with c-jun to upregulate IL-6 production and, in turn, PD-L1 expression on neutrophils."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Finally, additional layers of regulation are apparent in hepatocellular carcinoma, where miRNAs such as miR-192 and miR-204 help control HOTTIP expression, highlighting its integration into broader oncogenic networks."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings demonstrate that HOTTIP is a multifaceted oncogenic lncRNA whose aberrant expression facilitates tumor aggressiveness, metastasis, chemoresistance, and immune escape across multiple malignancies. Its pivotal function in reactivating HOXA loci and co-opting microRNA‐mediated repression underscores its promise as a prognostic biomarker and potential therapeutic target.\n "}]}, {"type": "t", "text": "\n</div>"}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Luca Quagliata, Matthias S Matter, Salvatore Piscuoglio, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA HOTTIP/HOXA13 expression is associated with disease progression and predicts outcome in hepatocellular carcinoma patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hepatology (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/hep.26740"}], "href": "https://doi.org/10.1002/hep.26740"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24114970"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24114970"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Dongkyun Kim, Jinsoo Song, Jiyeon Han, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Two non-coding RNAs, MicroRNA-101 and HOTTIP contribute cartilage integrity by epigenetic and homeotic regulation of integrin-α1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Signal (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cellsig.2013.08.034"}], "href": "https://doi.org/10.1016/j.cellsig.2013.08.034"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24018042"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24018042"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Shuai Chang, Junsong Liu, Shaochun Guo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "HOTTIP and HOXA13 are oncogenes associated with gastric cancer progression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/or.2016.4743"}], "href": "https://doi.org/10.3892/or.2016.4743"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27108607"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27108607"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Zhihua Li, Xiaohui Zhao, Yu Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The long non-coding RNA HOTTIP promotes progression and gemcitabine resistance by regulating HOXA13 in pancreatic cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Transl Med (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12967-015-0442-z"}], "href": "https://doi.org/10.1186/s12967-015-0442-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25889214"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25889214"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Zhiqiang Fu, Changhao Chen, Quanbo Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA HOTTIP modulates cancer stem cell properties in human pancreatic cancer by regulating HOXA9."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Lett (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.canlet.2017.09.019"}], "href": "https://doi.org/10.1016/j.canlet.2017.09.019"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28947139"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28947139"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "C Lin, Y Wang, Y Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcriptional and posttranscriptional regulation of HOXA13 by lncRNA HOTTIP facilitates tumorigenesis and metastasis in esophageal squamous carcinoma cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/onc.2017.133"}], "href": "https://doi.org/10.1038/onc.2017.133"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28534516"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28534516"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Qingling Yuan, Yang Liu, Yuxia Fan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA HOTTIP promotes papillary thyroid carcinoma cell proliferation, invasion and migration by regulating miR-637."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Biochem Cell Biol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biocel.2018.02.013"}], "href": "https://doi.org/10.1016/j.biocel.2018.02.013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29474928"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29474928"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Yanqin Sun, Bingshuang Hu, Qiongyao Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA HOTTIP promotes BCL-2 expression and induces chemoresistance in small cell lung cancer by sponging miR-216a."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-017-0113-5"}], "href": "https://doi.org/10.1038/s41419-017-0113-5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29367594"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29367594"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Anquan Shang, Weiwei Wang, Chenzheng Gu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA HOTTIP enhances IL-6 expression to potentiate immune escape of ovarian cancer cells by upregulating the expression of PD-L1 in neutrophils."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Clin Cancer Res (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13046-019-1394-6"}], "href": "https://doi.org/10.1186/s13046-019-1394-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31533774"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31533774"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Yunxia Ge, Xiaodan Yan, Yiguang Jin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MiRNA-192 [corrected] and miRNA-204 Directly Suppress lncRNA HOTTIP and Interrupt GLS1-Mediated Glutaminolysis in Hepatocellular Carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.1005726"}], "href": "https://doi.org/10.1371/journal.pgen.1005726"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26710269"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26710269"}]}]}]}
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| Synonyms | NCRNA00213, HOXA13-AS1, HOXA-AS6 |
| NCBI Gene ID | 100316868 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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HOTTIP has 664 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 24 datasets.
Click the + buttons to view associations for HOTTIP from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of HOTTIP gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of HOTTIP gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of HOTTIP gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of HOTTIP gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of HOTTIP gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at HOTTIP gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of HOTTIP gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of HOTTIP gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with HOTTIP gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of HOTTIP gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of HOTTIP gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of HOTTIP gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of HOTTIP gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of HOTTIP gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of HOTTIP gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with HOTTIP gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with HOTTIP gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of HOTTIP gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of HOTTIP gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MGI Mouse Phenotype Associations 2023 | phenotypes of transgenic mice caused by HOTTIP gene mutations from the MGI Mouse Phenotype Associations 2023 dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of HOTTIP gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| MPO Gene-Phenotype Associations | phenotypes of transgenic mice caused by HOTTIP gene mutations from the MPO Gene-Phenotype Associations dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of HOTTIP gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at HOTTIP gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |