HOXB-AS3 Gene

Name HOXB cluster antisense RNA 3
Description Involved in negative regulation of pre-miRNA processing; protein stabilization; and regulation of RNA splicing. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n HOXB‐AS3 is a multifunctional long noncoding RNA that exhibits context‐dependent roles in human disease. In colon cancer, HOXB‐AS3 is unique in that its transcript encodes a conserved 53–amino acid micropeptide that suppresses tumor growth by interfering with hnRNP A1–mediated pyruvate kinase M splicing, thereby curtailing metabolic reprogramming."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In contrast, in hematologic malignancies such as acute myeloid leukemia and myelodysplastic syndromes, elevated HOXB‐AS3 expression promotes cell proliferation by engaging with effector proteins (e.g., EBP1) to enhance ribosomal RNA transcription and expedite cell cycle progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In several solid tumors, including non–small cell lung cancer, epithelial ovarian cancer, hepatocellular carcinoma, endometrial carcinoma, and oral squamous cell carcinoma, HOXB‐AS3 functions predominantly as an oncogene. For example, its upregulation in lung cancer is associated with enhanced proliferation and invasion through modulation of the PI3K/AKT pathway"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ", while in ovarian and endometrial cancers, HOXB‐AS3 promotes malignant behaviors via mechanisms that include deregulation of glycolytic factors through microRNA sponging"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "and upregulation of ADAM9 by sequestering miR‐498‑5p."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " In hepatocellular carcinoma, it interacts with DNMT1 to epigenetically repress p53, thereby facilitating cell proliferation"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": ", and in oral squamous cell carcinoma, its encoded protein directly binds IGF2BP2 to stabilize c–Myc."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond its oncogenic roles, HOXB‐AS3 also exerts protective functions; in doxorubicin–treated cardiomyocytes, it mitigates cytotoxicity by targeting miR–875–3p and restoring proliferative capacity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": " Its deep evolutionary conservation further suggests developmental functions; along with its paralog HOXA–AS3, HOXB–AS3 is involved in regulating the expression of HOX genes during embryonic differentiation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": " Moreover, recent reviews have underscored the broader significance of small open reading frame–derived peptides encoded by HOXB‐AS3 in cancer"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": ", and its role in forming complexes with EZH2 to suppress Dicer expression has been implicated in sorafenib resistance in liver cancer."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": " Finally, HOXB‐AS3 has emerged as a component of prognostic RNA signatures in prostate cancer."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "14"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these studies reveal that HOXB‐AS3 can function either as a tumor suppressor or as an oncogene depending on the cellular context and cancer type. It achieves its diverse effects through multiple mechanisms—including metabolic regulation, modulation of alternative splicing, promoter and chromatin interactions, and microRNA sponging—highlighting its potential as a diagnostic biomarker and therapeutic target.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jin-Zhou Huang, Min Chen, De Chen, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "The long non-coding RNA HOXB-AS3 regulates ribosomal RNA transcription in NPM1-mutated acute myeloid leukemia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-019-13259-2"}], "href": "https://doi.org/10.1038/s41467-019-13259-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31767858"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31767858"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Huai-Hsuan Huang, Fei-Yun Chen, Wen-Chien Chou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA HOXB-AS3 promotes myeloid cell proliferation and its higher expression is an adverse prognostic marker in patients with acute myeloid leukemia and myelodysplastic syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Cancer (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12885-019-5822-y"}], "href": "https://doi.org/10.1186/s12885-019-5822-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31234830"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31234830"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Wenyang Jiang, Jindan Kai, Donghang Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "lncRNA HOXB-AS3 exacerbates proliferation, migration, and invasion of lung cancer via activating the PI3K-AKT pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.29618"}], "href": "https://doi.org/10.1002/jcp.29618"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32039488"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32039488"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Sujuan Xu, Genmei Jia, Huilin Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA HOXB-AS3 promotes growth, invasion and migration of epithelial ovarian cancer by altering glycolysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Life Sci (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.lfs.2020.118636"}], "href": "https://doi.org/10.1016/j.lfs.2020.118636"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33148416"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33148416"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Ying Xing, Xianhua Sun, Feng Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA (lncRNA) HOXB-AS3 promotes cell proliferation and inhibits apoptosis by regulating ADAM9 expression through targeting miR-498-5p in endometrial carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Int Med Res (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1177/03000605211013548"}], "href": "https://doi.org/10.1177/03000605211013548"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34187214"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34187214"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "X-M Zhang, H Chen, B Zhou, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Development and validation of a set of novel and robust 4-lncRNA-based nomogram predicting prostate cancer survival by bioinformatics analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0249951"}], "href": "https://doi.org/10.1371/journal.pone.0249951"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33945533"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33945533"}]}]}]}
NCBI Gene ID 404266
API
Download Associations
Predicted Functions View HOXB-AS3's ARCHS4 Predicted Functions.
Co-expressed Genes View HOXB-AS3's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View HOXB-AS3's ARCHS4 Predicted Functions.

Functional Associations

HOXB-AS3 has 1,105 functional associations with biological entities spanning 6 categories (organism, disease, phenotype or trait, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 19 datasets.

Click the + buttons to view associations for HOXB-AS3 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of HOXB-AS3 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of HOXB-AS3 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of HOXB-AS3 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of HOXB-AS3 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of HOXB-AS3 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with HOXB-AS3 gene from the CellMarker Gene-Cell Type Associations dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of HOXB-AS3 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of HOXB-AS3 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of HOXB-AS3 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of HOXB-AS3 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of HOXB-AS3 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of HOXB-AS3 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GO Biological Process Annotations 2023 biological processes involving HOXB-AS3 gene from the curated GO Biological Process Annotations 2023 dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of HOXB-AS3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of HOXB-AS3 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of HOXB-AS3 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of HOXB-AS3 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of HOXB-AS3 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of HOXB-AS3 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.