HOXB-AS4 Gene

Name HOXB cluster antisense RNA 4
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Among the long noncoding RNAs featured in these studies, HOXB‐AS4 was identified in pancreatic cancer as a gene displaying cancer‐specific DNA methylation. In a genome‐wide methylation screening of pancreatic neoplasms, HOXB‐AS4 was one of four loci—including SIM1, MIR129‐2, and NR1I2—that showed hypermethylation exclusively in cancer cells relative to noncancerous tissues. This cancer‐specific methylation underscores its potential utility as a biomarker for estimating the pancreatic cancer cell fraction in mixed DNA samples, thereby facilitating more precise molecular analyses of tumor specimens."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Hiroki Ishihara, Satoshi Yamashita, Ryosuke Amano, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pancreatic Cancer Cell Fraction Estimation in a DNA Sample."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncology (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1159/000491637"}], "href": "https://doi.org/10.1159/000491637"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30149376"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30149376"}]}]}]}
NCBI Gene ID 100874351
API
Download Associations
Predicted Functions View HOXB-AS4's ARCHS4 Predicted Functions.
Co-expressed Genes View HOXB-AS4's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View HOXB-AS4's ARCHS4 Predicted Functions.

Functional Associations

HOXB-AS4 has 10 functional associations with biological entities spanning 3 categories (chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 4 datasets.

Click the + buttons to view associations for HOXB-AS4 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of HOXB-AS4 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of HOXB-AS4 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of HOXB-AS4 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of HOXB-AS4 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.