| Name | HOXC cluster antisense RNA 3 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n HOXC‐AS3 is a long noncoding RNA that emerges as a multifunctional regulator across a spectrum of human pathologies, particularly in cancer and abnormal tissue differentiation. In gastric cancer, HOXC‐AS3 is markedly overexpressed and correlates with poor clinical outcomes by promoting cell proliferation and migration; its transcription is activated through gains in histone H3K4me3 and H3K27ac, and its oncogenic effects are at least partly mediated by interacting with the RNA‐binding protein YBX1 to coordinately regulate a network of target genes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In the bone marrow microenvironment of multiple myeloma patients, HOXC‐AS3 interacts with and stabilizes HOXC10 mRNA, thereby suppressing osteogenic differentiation of mesenchymal stromal cells and contributing to bone loss."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In glioblastoma, HOXB13 directly binds the HOXC‐AS3 promoter, leading to its upregulation and subsequently driving malignant proliferation, migration, and invasion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " In non‐small cell lung cancer (NSCLC), HOXC‐AS3 further promotes tumorigenesis by binding to YBX1 to prevent its MDM2‑mediated ubiquitination, which results in increased transcription of HOXC8 and enhanced growth and metastatic potential."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Similarly, in invasive mucinous adenocarcinoma of the lung, HOXC‐AS3 is highly expressed and accelerates cell proliferation and migration through recruitment of the RNA‐binding protein FUS to stabilize FOXM1 mRNA."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " In ovarian cancer, upregulated HOXC‐AS3 sequesters factors required for the maturation of miR‑96, thereby reducing levels of mature miR‑96 which normally act as tumor suppressors, ultimately promoting cell proliferation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Moreover, in glioma, HOXC‐AS3 functions as a competing endogenous RNA by sponging miR‑216 to modulate the expression of F11 receptor (F11R), facilitating malignant progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " In addition, overexpression of HOXC‐AS3 has been linked to poor prognosis in breast cancer, underscoring its role as an oncogenic factor in multiple tissue contexts."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " Collectively, these studies highlight HOXC‐AS3 as an important oncogenic and regulatory lncRNA whose diverse mechanisms—including modulation of protein stability, epigenetic activation, and microRNA processing—contribute to tumor development and progression as well as abnormal differentiation, thereby representing a promising target for diagnostic and therapeutic intervention.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Erbao Zhang, Xuezhi He, Chongguo Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A novel long noncoding RNA HOXC-AS3 mediates tumorigenesis of gastric cancer by binding to YBX1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genome Biol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13059-018-1523-0"}], "href": "https://doi.org/10.1186/s13059-018-1523-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30286788"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30286788"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Bingzong Li, Huiying Han, Sha Song, et al. "}, {"type": "b", "children": [{"type": "t", "text": "HOXC10 Regulates Osteogenesis of Mesenchymal Stromal Cells Through Interaction with Its Natural Antisense Transcript lncHOXC-AS3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Stem Cells (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/stem.2925"}], "href": "https://doi.org/10.1002/stem.2925"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30353595"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30353595"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xi Wang, Yi Sun, Tuoye Xu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "HOXB13 promotes proliferation, migration, and invasion of glioblastoma through transcriptional upregulation of lncRNA HOXC-AS3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.28819"}], "href": "https://doi.org/10.1002/jcb.28819"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31062400"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31062400"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "HongBo Su, GuanZhi Fan, Jin Huang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA HOXC-AS3 promotes non-small-cell lung cancer growth and metastasis through upregulation of YBX1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-022-04723-x"}], "href": "https://doi.org/10.1038/s41419-022-04723-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35387975"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35387975"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Zhenhua Yang, Tianjun Hu "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA HOXC-AS3 facilitates the progression of invasive mucinous adenocarcinomas of the lung via modulating FUS/FOXM1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "In Vitro Cell Dev Biol Anim (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11626-019-00414-8"}], "href": "https://doi.org/10.1007/s11626-019-00414-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31925650"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31925650"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Bo Yang, Li Sun, Lei Liang "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA HOXC-AS3 Suppresses the Formation of Mature miR-96 in Ovarian Cancer Cells to Promote Cell Proliferation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Reprod Sci (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s43032-021-00500-x"}], "href": "https://doi.org/10.1007/s43032-021-00500-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33651311"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33651311"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Yongshuai Li, Lu Peng, Xianwen Cao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Long Non-Coding RNA HOXC-AS3 Promotes Glioma Progression by Sponging miR-216 to Regulate F11R Expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Oncol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fonc.2022.845009"}], "href": "https://doi.org/10.3389/fonc.2022.845009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35402226"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35402226"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Jun Su, Bo Yu, Chongguo Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA HOXC-AS3 indicates a poor prognosis and regulates tumorigenesis by binding to YBX1 in breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Transl Res (2020)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33194034"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33194034"}]}]}]}
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| NCBI Gene ID | 100874365 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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HOXC-AS3 has 4 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 2 datasets.
Click the + buttons to view associations for HOXC-AS3 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of HOXC-AS3 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of HOXC-AS3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |