| Name | HPN antisense RNA 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n HPN‐AS1 is a long noncoding RNA that has emerged as a potential prognostic biomarker in several cancer contexts. In hepatocellular carcinoma, HPN‐AS1 is one of eight lncRNAs whose expression levels were integrated into a prognostic scoring model that correlated with tumor mutation burden and immune infiltration, indicating that its dysregulation may influence tumor behavior and patient outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Similarly, in hormone‐related cancers, HPN‐AS1 was identified as an androgen‐responsive lncRNA with prognostic value, suggesting involvement in signaling pathways that modulate oncogenesis and disease progression (3). Its inclusion among the set of genes used in a transcriptome‐based diagnostic model for prostate cancer further supports its potential utility as a biomarker for disease classification."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Although the study examining lipid traits in type 2 diabetes"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "does not directly address HPN‐AS1 function, the cumulative evidence across these studies underscores HPN‐AS1’s emerging role in cancer prognosis and possibly in the regulation of tumorigenic pathways.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Feng Qi, Xiaojing Du, Zhiying Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Tumor Mutation Burden-Associated LINC00638/miR-4732-3p/ULBP1 Axis Promotes Immune Escape "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "via"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " PD-L1 in Hepatocellular Carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Oncol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fonc.2021.729340"}], "href": "https://doi.org/10.3389/fonc.2021.729340"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34568062"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34568062"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Dan Wang, Mingyue Li, Jing Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive Characterization of Androgen-Responsive lncRNAs Mediated Regulatory Network in Hormone-Related Cancers."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dis Markers (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2020/8884450"}], "href": "https://doi.org/10.1155/2020/8884450"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33082888"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33082888"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jason B Nikas, Nikos T Mitanis, Emily G Nikas "}, {"type": "b", "children": [{"type": "t", "text": "Whole Exome and Transcriptome RNA-Sequencing Model for the Diagnosis of Prostate Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "ACS Omega (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1021/acsomega.9b02995"}], "href": "https://doi.org/10.1021/acsomega.9b02995"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31956794"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31956794"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Skylar W Marvel, Daniel M Rotroff, Michael J Wagner, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Common and rare genetic markers of lipid variation in subjects with type 2 diabetes from the ACCORD clinical trial."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PeerJ (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7717/peerj.3187"}], "href": "https://doi.org/10.7717/peerj.3187"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28480134"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28480134"}]}]}]}
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| NCBI Gene ID | 100128675 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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HPN-AS1 has 735 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.
Click the + buttons to view associations for HPN-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of HPN-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of HPN-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of HPN-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of HPN-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of HPN-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GWAS Catalog SNP-Phenotype Associations | phenotypes associated with HPN-AS1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset. | |
| HuGE Navigator Gene-Phenotype Associations | phenotypes associated with HPN-AS1 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of HPN-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of HPN-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of HPN-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |