HPYR1 Gene

Name Helicobacter pylori responsive 1 (non-protein coding)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent high‐throughput transcriptional analyses of Helicobacter pylori–infected gastric epithelial cells have uncovered a spectrum of host genes that are differentially expressed upon infection. In particular, one study employing cDNA array hybridization identified a novel gene, HPYR1, whose altered expression in vivo was confirmed in gastric tissues from H. pylori–infected patients (see."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Although the specific biochemical function of HPYR1 remains to be elucidated, its differential regulation alongside genes encoding growth factors, cytokines/chemokines, apoptosis regulators, and metalloprotease‐disintegrins suggests that HPYR1 might contribute to the host cellular response to infection by modulating inflammation, tissue remodeling, or cell signaling pathways.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n This finding fits into a broader context where multiple studies have described how Helicobacter infections alter host transcriptional programs. For example, models of co‑infection with the liver fluke Opisthorchis viverrini have revealed mutualistic associations that enhance H. pylori colonization and suggest complex host–pathogen interactions with implications for cholangiocarcinoma development."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Similarly, dual RNA‑sequencing approaches in fungal infections"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "and integrative lncRNA‑miRNA‑mRNA network analyses in breast cancer"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "have underscored the importance of transcriptomic profiling in uncovering novel regulatory elements involved in pathogenic processes.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, the identification of HPYR1 as a novel, differentially expressed gene in H. pylori–infected gastric epithelial cells points to a potential role in mediating the inflammatory and cellular remodeling responses characteristic of Helicobacter-induced gastrointestinal pathology. Further studies on HPYR1 may reveal its contribution as a molecular marker or active participant in the modulation of host defense mechanisms during infection.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "J M Cox, C L Clayton, T Tomita, et al. "}, {"type": "b", "children": [{"type": "t", "text": "cDNA array analysis of cag pathogenicity island-associated Helicobacter pylori epithelial cell response genes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Infect Immun (2001)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/IAI.69.11.6970-6980.2001"}], "href": "https://doi.org/10.1128/IAI.69.11.6970-6980.2001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11598072"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11598072"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Raksawan Deenonpoe, Chariya Chomvarin, Chawalit Pairojkul, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The carcinogenic liver fluke Opisthorchis viverrini is a reservoir for species of Helicobacter."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Asian Pac J Cancer Prev (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7314/apjcp.2015.16.5.1751"}], "href": "https://doi.org/10.7314/apjcp.2015.16.5.1751"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25773821"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25773821"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Raksawan Deenonpoe, Eimorn Mairiang, Pisaln Mairiang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Elevated prevalence of Helicobacter species and virulence factors in opisthorchiasis and associated hepatobiliary disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep42744"}], "href": "https://doi.org/10.1038/srep42744"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28198451"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28198451"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Francisco J Enguita, Marina C Costa, Ana Marisa Fusco-Almeida, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcriptomic Crosstalk between Fungal Invasive Pathogens and Their Host Cells: Opportunities and Challenges for Next-Generation Sequencing Methods."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Fungi (Basel) (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/jof2010007"}], "href": "https://doi.org/10.3390/jof2010007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29376924"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29376924"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Yuhan Zhang, Yongfeng Li, Qing Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of an lncRNA‑miRNA‑mRNA interaction mechanism in breast cancer based on bioinformatic analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2017.7304"}], "href": "https://doi.org/10.3892/mmr.2017.7304"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28849135"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28849135"}]}]}]}
Synonyms NCRNA00027, LINC00027, HPRG1
NCBI Gene ID 93668
API
Download Associations
Predicted Functions View HPYR1's ARCHS4 Predicted Functions.
Co-expressed Genes View HPYR1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View HPYR1's ARCHS4 Predicted Functions.

Functional Associations

HPYR1 has 544 functional associations with biological entities spanning 6 categories (molecular profile, organism, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 21 datasets.

Click the + buttons to view associations for HPYR1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of HPYR1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of HPYR1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of HPYR1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of HPYR1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of HPYR1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at HPYR1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of HPYR1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of HPYR1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of HPYR1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of HPYR1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of HPYR1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of HPYR1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of HPYR1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of HPYR1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of HPYR1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of HPYR1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of HPYR1 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of HPYR1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at HPYR1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
Sanger Dependency Map Cancer Cell Line Proteomics cell lines associated with HPYR1 protein from the Sanger Dependency Map Cancer Cell Line Proteomics dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of HPYR1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.