HTR5A-AS1 Gene

Name HTR5A antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Although the study in"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "does not explicitly mention HTR5A‐AS1, its emphasis on differential transcript regulation in intestinal M cells versus Caco‑2 cells provides a context for understanding potential roles of long noncoding RNAs—including antisense transcripts such as HTR5A‑AS1—in modulating immune responses. In this investigation, distinct expression patterns were observed when comparing uninfected M cells with epithelial Caco‑2 cells, as well as during infection with wild‐type and ΔspeG mutant Salmonella Typhimurium. The data reveal that infection elicits a reprogramming of the transcriptome, with some transcripts (including various long noncoding RNAs) undergoing significant up‐ or down‐regulation in a speG‑dependent or ‑independent manner (1). Although HTR5A‑AS1 was not specifically analyzed, by analogy with other long noncoding RNAs highlighted in the study, one could hypothesize that HTR5A‑AS1 may contribute to the regulatory networks that govern M cell functional identity and immune modulation in response to bacterial challenge. Further research would be needed to characterize its precise mechanistic contribution, especially regarding its potential influence on cellular differentiation, pathogen response, and the broader orchestration of mucosal immunity.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ke-Chuan Wang, Chih-Hung Huang, Ching-Jou Huang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Impacts of Salmonella enterica Serovar Typhimurium and Its speG Gene on the Transcriptomes of In Vitro M Cells and Caco-2 Cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0153444"}], "href": "https://doi.org/10.1371/journal.pone.0153444"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27064787"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27064787"}]}]}]}
Synonyms HTR5AOS
NCBI Gene ID 100128264
API
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Predicted Functions View HTR5A-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View HTR5A-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View HTR5A-AS1's ARCHS4 Predicted Functions.

Functional Associations

HTR5A-AS1 has 192 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 4 datasets.

Click the + buttons to view associations for HTR5A-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of HTR5A-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of HTR5A-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
HPA Tissue Protein Expression Profiles tissues with high or low expression of HTR5A-AS1 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of HTR5A-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.