| Name | intraflagellar transport associated protein |
| Description | This gene encodes a protein that was identified as a cellular interacting partner of non-structural protein 10 of the severe acute respiratory syndrome coronavirus (SARS-CoV). The encoded protein may function as a negative regulator of transcription. There is a pseudogene for this gene on chromosome 1. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2013] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent work has uncovered a novel role for an uncharacterized protein—referred to as IFTAP (encoded by C11ORF74)—in the regulation of ciliary protein trafficking. In vertebrate cells, IFTAP interacts specifically with the intraflagellar transport‐A (IFT‐A) complex via its IFT122 subunit. At least a sub‐population of IFTAP molecules is transported in a retrograde manner toward the distal tip of the cilium, as evidenced by their accumulation at the tip under conditions where an IFT‐A subunit (IFT139) is absent."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Functionally, IFTAP appears to facilitate the proper entry of the BBSome complex into cilia. In IFTAP knockout cells, although ciliary trafficking of certain G‐protein–coupled receptors (such as Smoothened and GPR161) remains intact, BBSome components are excluded from the ciliary compartment. This suggests that IFTAP plays a selective role, acting as a regulatory accessory that fine‐tunes the delivery of specific ciliary cargoes rather than serving as a core component of the bidirectional intraflagellar transport machinery.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Although the overall impact of IFTAP on ciliogenesis and Hedgehog signaling appears limited, its evolutionary conservation among vertebrates points to a specialized, perhaps context‐dependent, role in modulating ciliary composition and function. Further studies aimed at complete inactivation and functional dissection of IFTAP will be necessary to fully elucidate its transcriptional and posttranscriptional contributions within ciliated cells.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Mariko Takahara, Masataka Kunii, Kentaro Nakamura, et al. "}, {"type": "b", "children": [{"type": "t", "text": "C11ORF74 interacts with the IFT-A complex and participates in ciliary BBSome localization."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biochem (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/jb/mvy100"}], "href": "https://doi.org/10.1093/jb/mvy100"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30476139"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30476139"}]}]}]}
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| NCBI Gene ID | 119710 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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IFTAP has 766 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 14 datasets.
Click the + buttons to view associations for IFTAP from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of IFTAP gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with IFTAP gene from the CellMarker Gene-Cell Type Associations dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of IFTAP gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing IFTAP protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of IFTAP gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with IFTAP gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of IFTAP gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of IFTAP gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of IFTAP gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of IFTAP gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of IFTAP gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of IFTAP gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of IFTAP gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of IFTAP gene from the RummaGEO Gene Perturbation Signatures dataset. | |